Analysis of interatomic Contacts of Structural Units in PDB entry:
4HO5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HO5 entry

There are 2 chains in PDB entry 4HO5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 288
B
 MET 1SER 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4HO5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 15Right-handed 310
Helix 2
2
A
22 25Right-handed 310
Helix 3
3
A
34 44Right-handed alpha
Helix 4
4
A
57 66Right-handed alpha
Helix 5
5
A
68 72Right-handed 310
Helix 6
6
A
87 93Right-handed alpha
Helix 7
7
A
93 98Right-handed alpha
Helix 8
8
A
115 126Right-handed alpha
Helix 9
9
A
139 142Right-handed 310
Helix 10
10
A
179 187Right-handed alpha
Helix 11
11
A
196 207Right-handed alpha
Helix 12
12
A
226 244Right-handed alpha
Helix 13
13
A
250 258Right-handed alpha
Helix 14
14
A
262 271Right-handed alpha
Helix 15
15
A
272 274Right-handed 310
Helix 16
16
A
276 287Right-handed alpha
Helix 17
17
B
11 15Right-handed 310
Helix 18
18
B
22 25Right-handed 310
Helix 19
19
B
34 44Right-handed alpha
Helix 20
20
B
57 66Right-handed alpha
Helix 21
21
B
68 72Right-handed 310
Helix 22
22
B
85 87Right-handed 310
Helix 23
23
B
88 93Right-handed alpha
Helix 24
24
B
93 98Right-handed alpha
Helix 25
25
B
115 125Right-handed alpha
Helix 26
26
B
139 142Right-handed 310
Helix 27
27
B
179 187Right-handed alpha
Helix 28
28
B
196 208Right-handed alpha
Helix 29
29
B
226 244Right-handed alpha
Helix 30
30
B
250 258Right-handed alpha
Helix 31
31
B
262 271Right-handed alpha
Helix 32
32
B
272 274Right-handed 310
Helix 33
33
B
276 288Right-handed alpha
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There are 8 sheets in PDB entry 4HO5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
48 53parallel
Strand 3
A
2 6parallel
Strand 4
A
102 106parallel
Strand 5
A
168 176anti-parallel
Strand 6
A
130 136anti-parallel
Strand 7
A
210 214parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
31 32anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
220 223anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
154 159anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 79first strand
Strand 2
B
48 53parallel
Strand 3
B
2 6parallel
Strand 4
B
102 106parallel
Strand 5
B
168 176anti-parallel
Strand 6
B
130 136anti-parallel
Strand 7
B
210 215parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
31 32anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 112first strand
Strand 2
B
220 222anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
156 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il