Analysis of interatomic Contacts of Structural Units in PDB entry:
4HOO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HOO entry

There are 2 chains in PDB entry 4HOO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12ASP 341
B
 GLN 12ASP 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4HOO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
98 105Right-handed alpha
Helix 4
4
A
117 128Right-handed alpha
Helix 5
5
A
159 161Right-handed 310
Helix 6
6
A
162 169Right-handed alpha
Helix 7
7
A
194 198Right-handed 310
Helix 8
8
A
216 218Right-handed 310
Helix 9
9
A
219 231Right-handed alpha
Helix 10
10
A
240 245Right-handed 310
Helix 11
11
A
250 257Right-handed alpha
Helix 12
12
A
297 299Right-handed 310
Helix 13
13
A
300 305Right-handed alpha
Helix 14
14
A
321 329Right-handed alpha
Helix 15
15
A
332 339Right-handed alpha
Helix 16
16
B
25 29Right-handed 310
Helix 17
17
B
30 41Right-handed alpha
Helix 18
18
B
42 46Right-handed 310
Helix 19
19
B
63 68Right-handed 310
Helix 20
20
B
98 106Right-handed alpha
Helix 21
21
B
117 129Right-handed alpha
Helix 22
22
B
159 161Right-handed 310
Helix 23
23
B
162 169Right-handed alpha
Helix 24
24
B
194 198Right-handed 310
Helix 25
25
B
216 218Right-handed 310
Helix 26
26
B
219 231Right-handed alpha
Helix 27
27
B
240 245Right-handed 310
Helix 28
28
B
250 257Right-handed alpha
Helix 29
29
B
297 299Right-handed 310
Helix 30
30
B
300 307Right-handed alpha
Helix 31
31
B
321 329Right-handed alpha
Helix 32
32
B
332 341Right-handed alpha
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There are 6 sheets in PDB entry 4HOO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
48 51parallel
Strand 3
A
271 274anti-parallel
Strand 4
A
199 207anti-parallel
Strand 5
A
288 295anti-parallel
Strand 6
A
179 183anti-parallel
Strand 7
A
135 141anti-parallel
Strand 8
A
75 82anti-parallel
Strand 9
A
85 92anti-parallel
Strand 10
A
247 249anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 71first strand
Strand 2
A
96 97anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 192first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
210 214anti-parallel
Strand 4
A
262 266anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
48 51parallel
Strand 3
B
271 274anti-parallel
Strand 4
B
199 207anti-parallel
Strand 5
B
288 295anti-parallel
Strand 6
B
179 183anti-parallel
Strand 7
B
135 141anti-parallel
Strand 8
B
75 82anti-parallel
Strand 9
B
85 92anti-parallel
Strand 10
B
247 249anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
96 97anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 192first strand
Strand 2
B
280 284anti-parallel
Strand 3
B
210 214anti-parallel
Strand 4
B
262 266anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il