Analysis of interatomic Contacts of Structural Units in PDB entry:
4HP4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HP4 entry

There are 22 chains in PDB entry 4HP4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12GLN 61
A
 GLY 63THR 74
A
 GLU 76HIS 78
A
 GLN 80GLU 83
A
 SER 85ASN 88
A
 MET 90LEU 92
A
 LEU 94TYR 99
A
 GLU 102ILE 115
A
 ASN 117GLU 118
A
 ARG 120HIS 129
A
 ASP 131HIS 134
B
 GLN 11GLN 61
B
 GLY 63THR 74
B
 GLU 76HIS 78
B
 GLN 80GLU 83
B
 SER 85ASN 88
B
 MET 90LEU 92
B
 LEU 94TYR 99
B
 GLU 102ILE 115
B
 ASN 117GLU 118
B
 ARG 120HIS 129
B
 ASP 131THR 135
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 4HP4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
45 53Right-handed alpha
Helix 3
3
A
55 60Right-handed alpha
Helix 4
4
A
66 70Right-handed 310
Helix 5
5
A
75 89Right-handed alpha
Helix 6
6
B
13 21Right-handed alpha
Helix 7
7
B
45 53Right-handed alpha
Helix 8
8
B
55 60Right-handed alpha
Helix 9
9
B
66 70Right-handed 310
Helix 10
10
B
75 89Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4HP4. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
29 33anti-parallel
Strand 3
A
122 131anti-parallel
Strand 4
A
105 116anti-parallel
Strand 5
A
92 99anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
29 33anti-parallel
Strand 3
B
122 131anti-parallel
Strand 4
B
105 116anti-parallel
Strand 5
B
92 99anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il