Analysis of interatomic Contacts of Structural Units in PDB entry:
4HPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HPF entry

There are 2 chains in PDB entry 4HPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 331CYS 1043
B
 LYS 331CYS 1043
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 4HPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
341 350Right-handed alpha
Helix 2
2
A
396 404Right-handed alpha
Helix 3
3
A
405 408Right-handed 310
Helix 4
4
A
421 440Right-handed alpha
Helix 5
5
A
451 455Right-handed 310
Helix 6
6
A
456 461Right-handed alpha
Helix 7
7
A
474 489Right-handed alpha
Helix 8
8
A
491 499Right-handed alpha
Helix 9
9
A
511 522Right-handed alpha
Helix 10
10
A
531 535Right-handed 310
Helix 11
11
A
538 550Right-handed alpha
Helix 12
12
A
592 598Right-handed alpha
Helix 13
13
A
599 601Right-handed 310
Helix 14
14
A
696 701Right-handed alpha
Helix 15
15
A
731 736Right-handed alpha
Helix 16
16
A
737 740Right-handed 310
Helix 17
17
A
744 748Right-handed 310
Helix 18
18
A
756 764Right-handed alpha
Helix 19
19
A
765 768Right-handed 310
Helix 20
20
A
782 789Right-handed alpha
Helix 21
21
A
790 794Right-handed 310
Helix 22
22
A
814 826Right-handed alpha
Helix 23
23
A
867 869Right-handed 310
Helix 24
24
A
870 879Right-handed alpha
Helix 25
25
A
888 891Right-handed 310
Helix 26
26
A
892 898Right-handed alpha
Helix 27
27
A
902 907Right-handed 310
Helix 28
28
A
908 916Right-handed alpha
Helix 29
29
A
916 929Right-handed alpha
Helix 30
30
A
971 976Right-handed 310
Helix 31
31
A
981 994Right-handed alpha
Helix 32
32
B
341 350Right-handed alpha
Helix 33
33
B
396 404Right-handed alpha
Helix 34
34
B
405 408Right-handed 310
Helix 35
35
B
421 440Right-handed alpha
Helix 36
36
B
451 455Right-handed 310
Helix 37
37
B
456 461Right-handed alpha
Helix 38
38
B
474 489Right-handed alpha
Helix 39
39
B
491 499Right-handed alpha
Helix 40
40
B
511 522Right-handed alpha
Helix 41
41
B
531 535Right-handed 310
Helix 42
42
B
538 551Right-handed alpha
Helix 43
43
B
592 598Right-handed alpha
Helix 44
44
B
599 601Right-handed 310
Helix 45
45
B
696 701Right-handed alpha
Helix 46
46
B
731 736Right-handed alpha
Helix 47
47
B
737 740Right-handed 310
Helix 48
48
B
744 748Right-handed 310
Helix 49
49
B
756 768Right-handed alpha
Helix 50
50
B
782 789Right-handed alpha
Helix 51
51
B
790 794Right-handed 310
Helix 52
52
B
814 826Right-handed alpha
Helix 53
53
B
867 869Right-handed 310
Helix 54
54
B
870 879Right-handed alpha
Helix 55
55
B
888 891Right-handed 310
Helix 56
56
B
892 898Right-handed alpha
Helix 57
57
B
902 907Right-handed 310
Helix 58
58
B
908 916Right-handed alpha
Helix 59
59
B
916 929Right-handed alpha
Helix 60
60
B
981 994Right-handed alpha
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There are 8 sheets in PDB entry 4HPF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 388first strand
Strand 2
A
363 365parallel
Strand 3
A
333 337parallel
Strand 4
A
410 413parallel
Strand 5
A
445 448parallel
Strand 6
A
471 473parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
585 589anti-parallel
Strand 3
A
553 558anti-parallel
Strand 4
A
571 572anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
773 777first strand
Strand 2
A
751 755parallel
Strand 3
A
716 720parallel
Strand 4
A
796 800parallel
Strand 5
A
861 864parallel
Strand 6
A
900 901parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 966first strand
Strand 2
A
1032 1037anti-parallel
Strand 3
A
996 1003anti-parallel
Strand 4
A
1015 1019anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
387 388first strand
Strand 2
B
363 365parallel
Strand 3
B
333 337parallel
Strand 4
B
410 413parallel
Strand 5
B
445 448parallel
Strand 6
B
471 473parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 529first strand
Strand 2
B
585 589anti-parallel
Strand 3
B
553 558anti-parallel
Strand 4
B
571 572anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
773 777first strand
Strand 2
B
751 755parallel
Strand 3
B
716 720parallel
Strand 4
B
796 800parallel
Strand 5
B
861 864parallel
Strand 6
B
900 901parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
962 966first strand
Strand 2
B
1032 1037anti-parallel
Strand 3
B
996 1003anti-parallel
Strand 4
B
1015 1019anti-parallel
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