Analysis of interatomic Contacts of Structural Units in PDB entry:
4HPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HPM entry

There are 4 chains in PDB entry 4HPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1594SER 1711
B
 GLN 163VAL 254
C
 ASP 1595SER 1711
D
 GLY 164VAL 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4HPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1625 1633Right-handed alpha
Helix 2
2
A
1635 1643Right-handed alpha
Helix 3
3
A
1653 1661Right-handed alpha
Helix 4
4
A
1693 1700Right-handed alpha
Helix 5
5
B
199 212Right-handed alpha
Helix 6
6
B
214 218Right-handed 310
Helix 7
7
B
232 241Right-handed alpha
Helix 8
8
C
1625 1633Right-handed alpha
Helix 9
9
C
1635 1643Right-handed alpha
Helix 10
10
C
1653 1662Right-handed alpha
Helix 11
11
C
1693 1700Right-handed alpha
Helix 12
12
D
199 212Right-handed alpha
Helix 13
13
D
232 241Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4HPM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1703 1707first strand
Strand 2
A
1596 1601anti-parallel
Strand 3
B
191 195anti-parallel
Strand 4
B
168 176anti-parallel
Strand 5
B
248 253parallel
Strand 6
B
219 222anti-parallel
Strand 7
B
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1609 1611first strand
Strand 2
A
1620 1624anti-parallel
Strand 3
A
1686 1691anti-parallel
Strand 4
A
1648 1652anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1703 1707first strand
Strand 2
C
1596 1601anti-parallel
Strand 3
D
191 195anti-parallel
Strand 4
D
168 175anti-parallel
Strand 5
D
248 253parallel
Strand 6
D
219 222anti-parallel
Strand 7
D
225 226anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1609 1611first strand
Strand 2
C
1620 1624anti-parallel
Strand 3
C
1686 1691anti-parallel
Strand 4
C
1648 1652anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il