Analysis of interatomic Contacts of Structural Units in PDB entry:
4HSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HSS entry

There are 2 chains in PDB entry 4HSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 42THR 455
B
 GLN 42GLN 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 4HSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
99 103Right-handed 310
Helix 2
2
A
106 111Right-handed alpha
Helix 3
3
A
254 258Right-handed 310
Helix 4
4
A
267 273Right-handed alpha
Helix 5
5
A
426 432Right-handed alpha
Helix 6
6
B
99 103Right-handed 310
Helix 7
7
B
254 258Right-handed 310
Helix 8
8
B
267 274Right-handed alpha
Helix 9
9
B
426 432Right-handed alpha
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There are 20 sheets in PDB entry 4HSS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 134first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
173 176parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
59 60anti-parallel
Strand 3
A
179 182parallel
Strand 4
A
150 152anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 122first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
137 145anti-parallel
Strand 4
A
156 160anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
A
199 207anti-parallel
Strand 3
A
279 288anti-parallel
Strand 4
A
230 240anti-parallel
Strand 5
A
243 244anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 252first strand
Strand 2
A
261 266anti-parallel
Strand 3
A
220 225anti-parallel
Strand 4
A
302 306anti-parallel
Strand 5
A
313 317anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
321 334anti-parallel
Strand 3
A
378 385anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 299first strand
Strand 2
A
321 334anti-parallel
Strand 3
A
443 450parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
346 354anti-parallel
Strand 3
A
371 372anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 358first strand
Strand 2
A
346 354anti-parallel
Strand 3
A
401 408anti-parallel
Strand 4
A
420 423anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
393 394anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 134first strand
Strand 2
B
52 57anti-parallel
Strand 3
B
173 176parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
59 60anti-parallel
Strand 3
B
179 182parallel
Strand 4
B
150 152anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 122first strand
Strand 2
B
85 91anti-parallel
Strand 3
B
137 145anti-parallel
Strand 4
B
156 160anti-parallel
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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 190first strand
Strand 2
B
199 207anti-parallel
Strand 3
B
279 288anti-parallel
Strand 4
B
230 240anti-parallel
Strand 5
B
243 244anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
261 266anti-parallel
Strand 3
B
221 225anti-parallel
Strand 4
B
301 306anti-parallel
Strand 5
B
313 317anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 299first strand
Strand 2
B
321 334anti-parallel
Strand 3
B
378 385anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 299first strand
Strand 2
B
321 334anti-parallel
Strand 3
B
443 450parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
346 354anti-parallel
Strand 3
B
371 372anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
346 354anti-parallel
Strand 3
B
401 408anti-parallel
Strand 4
B
420 423anti-parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
393 394anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il