Analysis of interatomic Contacts of Structural Units in PDB entry:
4HVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HVM entry

There are 4 chains in PDB entry 4HVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9HIS 464
B
 GLY 9PRO 463
C
 GLY 9HIS 464
D
 LEU 10GLU 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 4HVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
28 31Right-handed 310
Helix 3
3
A
45 60Right-handed alpha
Helix 4
4
A
61 63Right-handed 310
Helix 5
5
A
94 108Right-handed alpha
Helix 6
6
A
143 159Right-handed alpha
Helix 7
7
A
163 167Right-handed 310
Helix 8
8
A
169 173Right-handed 310
Helix 9
9
A
181 196Right-handed alpha
Helix 10
10
A
197 199Right-handed 310
Helix 11
11
A
221 229Right-handed alpha
Helix 12
12
A
238 253Right-handed alpha
Helix 13
13
A
280 284Right-handed alpha
Helix 14
14
A
310 328Right-handed alpha
Helix 15
15
A
331 342Right-handed alpha
Helix 16
16
A
351 354Right-handed 310
Helix 17
17
A
387 392Right-handed alpha
Helix 18
18
A
442 457Right-handed alpha
Helix 19
19
B
14 25Right-handed alpha
Helix 20
20
B
28 32Right-handed alpha
Helix 21
21
B
45 60Right-handed alpha
Helix 22
22
B
61 63Right-handed 310
Helix 23
23
B
94 109Right-handed alpha
Helix 24
24
B
143 160Right-handed alpha
Helix 25
25
B
163 167Right-handed 310
Helix 26
26
B
169 174Right-handed 310
Helix 27
27
B
181 196Right-handed alpha
Helix 28
28
B
197 199Right-handed 310
Helix 29
29
B
220 228Right-handed alpha
Helix 30
30
B
237 252Right-handed alpha
Helix 31
31
B
280 284Right-handed alpha
Helix 32
32
B
310 328Right-handed alpha
Helix 33
33
B
331 342Right-handed alpha
Helix 34
34
B
364 370Right-handed 310
Helix 35
35
B
387 392Right-handed 310
Helix 36
36
B
393 397Right-handed 310
Helix 37
37
B
442 457Right-handed alpha
Helix 38
38
C
14 25Right-handed alpha
Helix 39
39
C
28 31Right-handed 310
Helix 40
40
C
45 60Right-handed alpha
Helix 41
41
C
61 63Right-handed 310
Helix 42
42
C
94 108Right-handed alpha
Helix 43
43
C
143 159Right-handed alpha
Helix 44
44
C
163 167Right-handed 310
Helix 45
45
C
169 173Right-handed 310
Helix 46
46
C
181 196Right-handed alpha
Helix 47
47
C
221 229Right-handed alpha
Helix 48
48
C
239 252Right-handed alpha
Helix 49
49
C
280 284Right-handed alpha
Helix 50
50
C
310 328Right-handed alpha
Helix 51
51
C
331 342Right-handed alpha
Helix 52
52
C
351 354Right-handed 310
Helix 53
53
C
387 392Right-handed alpha
Helix 54
54
C
398 402Right-handed 310
Helix 55
55
C
442 457Right-handed alpha
Helix 56
56
D
14 25Right-handed alpha
Helix 57
57
D
45 60Right-handed alpha
Helix 58
58
D
94 109Right-handed alpha
Helix 59
59
D
143 159Right-handed alpha
Helix 60
60
D
163 167Right-handed 310
Helix 61
61
D
169 173Right-handed 310
Helix 62
62
D
181 196Right-handed alpha
Helix 63
63
D
197 199Right-handed 310
Helix 64
64
D
220 229Right-handed alpha
Helix 65
65
D
237 253Right-handed alpha
Helix 66
66
D
280 284Right-handed alpha
Helix 67
67
D
310 328Right-handed alpha
Helix 68
68
D
331 342Right-handed alpha
Helix 69
69
D
351 354Right-handed 310
Helix 70
70
D
364 369Right-handed 310
Helix 71
71
D
387 391Right-handed 310
Helix 72
72
D
393 397Right-handed 310
Helix 73
73
D
442 457Right-handed alpha
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There are 12 sheets in PDB entry 4HVM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
65 69anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 88first strand
Strand 2
A
119 125parallel
Strand 3
A
130 138anti-parallel
Strand 4
A
33 41anti-parallel
Strand 5
A
382 385anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 302first strand
Strand 2
A
271 279anti-parallel
Strand 3
A
356 358parallel
Strand 4
A
414 421parallel
Strand 5
A
424 431anti-parallel
Strand 6
A
213 220anti-parallel
Strand 7
D
399 400anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
73 77anti-parallel
Strand 3
B
65 69anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 88first strand
Strand 2
B
119 125parallel
Strand 3
B
130 138anti-parallel
Strand 4
B
33 41anti-parallel
Strand 5
B
383 385anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 219first strand
Strand 2
B
424 431anti-parallel
Strand 3
B
414 421anti-parallel
Strand 4
B
356 358parallel
Strand 5
B
271 279parallel
Strand 6
B
294 302anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 401first strand
Strand 2
C
213 220anti-parallel
Strand 3
C
424 431anti-parallel
Strand 4
C
414 421anti-parallel
Strand 5
C
356 358parallel
Strand 6
C
272 279parallel
Strand 7
C
294 301anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
73 77anti-parallel
Strand 3
C
65 69anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
84 88first strand
Strand 2
C
119 125parallel
Strand 3
C
130 138anti-parallel
Strand 4
C
33 41anti-parallel
Strand 5
C
382 385anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
74 77anti-parallel
Strand 3
D
65 68anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
84 88first strand
Strand 2
D
119 125parallel
Strand 3
D
130 138anti-parallel
Strand 4
D
33 41anti-parallel
Strand 5
D
382 385anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
213 219first strand
Strand 2
D
424 431anti-parallel
Strand 3
D
414 421anti-parallel
Strand 4
D
356 358parallel
Strand 5
D
271 279parallel
Strand 6
D
294 302anti-parallel
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