Analysis of interatomic Contacts of Structural Units in PDB entry:
4HVZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HVZ entry

There are 4 chains in PDB entry 4HVZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37LYS 250
B
 PRO 37LYS 250
C
 PRO 37LYS 250
D
 PRO 37LYS 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4HVZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
67 90Right-handed alpha
Helix 2
2
A
136 138Right-handed 310
Helix 3
3
A
139 150Right-handed alpha
Helix 4
4
A
165 191Right-handed alpha
Helix 5
5
A
214 216Right-handed 310
Helix 6
6
A
217 223Right-handed alpha
Helix 7
7
B
68 89Right-handed alpha
Helix 8
8
B
136 138Right-handed 310
Helix 9
9
B
139 149Right-handed alpha
Helix 10
10
B
165 191Right-handed alpha
Helix 11
11
B
217 225Right-handed alpha
Helix 12
12
C
68 89Right-handed alpha
Helix 13
13
C
139 151Right-handed alpha
Helix 14
14
C
164 192Right-handed alpha
Helix 15
15
C
216 225Right-handed alpha
Helix 16
16
D
67 88Right-handed alpha
Helix 17
17
D
136 138Right-handed 310
Helix 18
18
D
139 151Right-handed alpha
Helix 19
19
D
164 191Right-handed alpha
Helix 20
20
D
216 225Right-handed alpha
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There are 10 sheets in PDB entry 4HVZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 50first strand
Strand 2
A
237 250anti-parallel
Strand 3
A
194 203anti-parallel
Strand 4
B
39 46parallel
Strand 5
B
241 249anti-parallel
Strand 6
B
195 203anti-parallel
Strand 7
C
39 49parallel
Strand 8
C
237 250anti-parallel
Strand 9
C
211 212anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 212first strand
Strand 2
A
237 250anti-parallel
Strand 3
A
194 203anti-parallel
Strand 4
B
39 46parallel
Strand 5
B
241 249anti-parallel
Strand 6
B
195 203anti-parallel
Strand 7
C
39 49parallel
Strand 8
C
237 250anti-parallel
Strand 9
C
194 203anti-parallel
Strand 10
D
39 50parallel
Strand 11
D
237 249anti-parallel
Strand 12
D
195 202anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 65first strand
Strand 2
A
120 134anti-parallel
Strand 3
A
96 97anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 65first strand
Strand 2
A
120 134anti-parallel
Strand 3
A
102 108anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
237 238anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 65first strand
Strand 2
B
120 134anti-parallel
Strand 3
B
96 97anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 65first strand
Strand 2
B
120 134anti-parallel
Strand 3
B
101 108anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
120 135anti-parallel
Strand 3
C
96 108anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 64first strand
Strand 2
C
120 135anti-parallel
Strand 3
C
54 60anti-parallel
Strand 4
C
160 161anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 64first strand
Strand 2
D
120 134anti-parallel
Strand 3
D
96 108anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il