Analysis of interatomic Contacts of Structural Units in PDB entry:
4HXD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HXD entry

There are 4 chains in PDB entry 4HXD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 75
B
 ASP 2ILE 158
C
 MET 1GLY 75
D
 PHE 3ILE 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4HXD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 35Right-handed alpha
Helix 2
2
A
37 39Right-handed 310
Helix 3
3
A
56 60Right-handed 310
Helix 4
4
B
3 7Right-handed alpha
Helix 5
5
B
25 28Right-handed alpha
Helix 6
6
B
39 50Right-handed alpha
Helix 7
7
B
57 73Right-handed alpha
Helix 8
8
B
76 81Right-handed alpha
Helix 9
9
B
85 94Right-handed alpha
Helix 10
10
B
102 112Right-handed alpha
Helix 11
11
C
22 35Right-handed alpha
Helix 12
12
C
37 39Right-handed 310
Helix 13
13
D
3 7Right-handed 310
Helix 14
14
D
39 50Right-handed alpha
Helix 15
15
D
57 73Right-handed alpha
Helix 16
16
D
76 83Right-handed alpha
Helix 17
17
D
85 94Right-handed alpha
Helix 18
18
D
102 112Right-handed alpha
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There are 8 sheets in PDB entry 4HXD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
66 71parallel
Strand 4
A
41 45anti-parallel
Strand 5
A
48 49anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
B
100 101anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
16 19anti-parallel
Strand 3
B
126 133anti-parallel
Strand 4
B
23 24anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
16 19anti-parallel
Strand 3
B
126 133anti-parallel
Strand 4
B
116 121anti-parallel
Strand 5
B
142 146parallel
Strand 6
B
152 157anti-parallel
Strand 7
B
29 32anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 75first strand
Strand 2
D
100 101anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
16 19anti-parallel
Strand 3
D
126 133anti-parallel
Strand 4
D
23 24anti-parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 13first strand
Strand 2
D
16 19anti-parallel
Strand 3
D
126 133anti-parallel
Strand 4
D
116 121anti-parallel
Strand 5
D
142 147parallel
Strand 6
D
151 157anti-parallel
Strand 7
D
29 32anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il