Analysis of interatomic Contacts of Structural Units in PDB entry:
4HZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4HZD entry

There are 2 chains in PDB entry 4HZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 11THR 260
B
 VAL 16THR 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4HZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
17 34Right-handed alpha
Helix 3
3
A
37 45Right-handed alpha
Helix 4
4
A
50 64Right-handed alpha
Helix 5
5
A
69 84Right-handed alpha
Helix 6
6
A
86 102Right-handed alpha
Helix 7
7
A
108 114Right-handed alpha
Helix 8
8
A
115 133Right-handed alpha
Helix 9
9
A
135 150Right-handed alpha
Helix 10
10
B
17 34Right-handed alpha
Helix 11
11
B
37 45Right-handed alpha
Helix 12
12
B
50 64Right-handed alpha
Helix 13
13
B
69 84Right-handed alpha
Helix 14
14
B
86 102Right-handed alpha
Helix 15
15
B
108 115Right-handed alpha
Helix 16
16
B
115 134Right-handed alpha
Helix 17
17
B
135 150Right-handed alpha
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There are 6 sheets in PDB entry 4HZD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 154first strand
Strand 2
A
173 174parallel
Strand 3
A
191 193parallel
Strand 4
A
217 219parallel
Strand 5
A
235 236parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 160first strand
Strand 2
A
179 180parallel
Strand 3
A
205 206parallel
Strand 4
A
223 224parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
185 186parallel
Strand 3
A
211 212parallel
Strand 4
A
229 230parallel
Strand 5
A
244 247parallel
Strand 6
A
252 256anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 154first strand
Strand 2
B
172 174parallel
Strand 3
B
191 193parallel
Strand 4
B
217 219parallel
Strand 5
B
235 236parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
159 160first strand
Strand 2
B
179 180parallel
Strand 3
B
205 206parallel
Strand 4
B
223 224parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
185 186parallel
Strand 3
B
211 212parallel
Strand 4
B
229 230parallel
Strand 5
B
244 247parallel
Strand 6
B
252 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il