Analysis of interatomic Contacts of Structural Units in PDB entry:
4I04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4I04 entry

There are 4 chains in PDB entry 4I04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 9ASN 323
B
 LYS 8ASN 323
C
 ASN 6ASN 323
D
 ASN 6ASN 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 4I04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
38 44Right-handed alpha
Helix 3
3
A
52 60Right-handed alpha
Helix 4
4
A
78 82Right-handed alpha
Helix 5
5
A
85 90Right-handed 310
Helix 6
6
A
99 116Right-handed alpha
Helix 7
7
A
126 134Right-handed alpha
Helix 8
8
A
135 138Right-handed 310
Helix 9
9
A
139 143Right-handed 310
Helix 10
10
A
145 156Right-handed alpha
Helix 11
11
A
210 215Right-handed alpha
Helix 12
12
A
227 239Right-handed alpha
Helix 13
13
A
250 252Right-handed 310
Helix 14
14
A
309 313Right-handed 310
Helix 15
15
B
13 22Right-handed alpha
Helix 16
16
B
38 44Right-handed alpha
Helix 17
17
B
52 60Right-handed alpha
Helix 18
18
B
78 82Right-handed alpha
Helix 19
19
B
85 90Right-handed 310
Helix 20
20
B
99 116Right-handed alpha
Helix 21
21
B
126 134Right-handed alpha
Helix 22
22
B
135 138Right-handed 310
Helix 23
23
B
139 143Right-handed 310
Helix 24
24
B
145 156Right-handed alpha
Helix 25
25
B
210 215Right-handed 310
Helix 26
26
B
227 239Right-handed alpha
Helix 27
27
B
250 252Right-handed 310
Helix 28
28
B
309 313Right-handed 310
Helix 29
29
C
13 23Right-handed alpha
Helix 30
30
C
38 44Right-handed alpha
Helix 31
31
C
52 60Right-handed alpha
Helix 32
32
C
78 82Right-handed alpha
Helix 33
33
C
85 90Right-handed 310
Helix 34
34
C
99 116Right-handed alpha
Helix 35
35
C
126 134Right-handed alpha
Helix 36
36
C
135 138Right-handed 310
Helix 37
37
C
139 143Right-handed 310
Helix 38
38
C
145 156Right-handed alpha
Helix 39
39
C
210 215Right-handed alpha
Helix 40
40
C
227 239Right-handed alpha
Helix 41
41
C
250 252Right-handed 310
Helix 42
42
C
309 313Right-handed 310
Helix 43
43
D
13 23Right-handed alpha
Helix 44
44
D
38 44Right-handed alpha
Helix 45
45
D
52 60Right-handed alpha
Helix 46
46
D
78 82Right-handed alpha
Helix 47
47
D
99 116Right-handed alpha
Helix 48
48
D
126 134Right-handed alpha
Helix 49
49
D
139 143Right-handed 310
Helix 50
50
D
145 156Right-handed alpha
Helix 51
51
D
210 215Right-handed alpha
Helix 52
52
D
227 239Right-handed alpha
Helix 53
53
D
250 252Right-handed 310
Helix 54
54
D
309 313Right-handed 310
Back to top of page

There are 12 sheets in PDB entry 4I04. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
301 305parallel
Strand 4
A
283 289anti-parallel
Strand 5
A
266 280anti-parallel
Strand 6
A
76 77anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
301 305parallel
Strand 4
A
283 289anti-parallel
Strand 5
A
266 280anti-parallel
Strand 6
A
241 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
220 224parallel
Strand 3
A
318 321anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
301 305parallel
Strand 4
B
283 289anti-parallel
Strand 5
B
266 280anti-parallel
Strand 6
B
76 77anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
301 305parallel
Strand 4
B
283 289anti-parallel
Strand 5
B
266 280anti-parallel
Strand 6
B
241 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
220 224parallel
Strand 3
B
318 321anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
301 305parallel
Strand 4
C
283 289anti-parallel
Strand 5
C
266 280anti-parallel
Strand 6
C
76 77anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 30first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
301 305parallel
Strand 4
C
283 289anti-parallel
Strand 5
C
266 280anti-parallel
Strand 6
C
241 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
220 224parallel
Strand 3
C
318 321anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 30first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
301 305parallel
Strand 4
D
283 289anti-parallel
Strand 5
D
266 280anti-parallel
Strand 6
D
76 77anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 30first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
301 305parallel
Strand 4
D
283 289anti-parallel
Strand 5
D
266 280anti-parallel
Strand 6
D
241 248anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 63first strand
Strand 2
D
220 224parallel
Strand 3
D
318 321anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il