Analysis of interatomic Contacts of Structural Units in PDB entry:
4I4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4I4J entry

There are 8 chains in PDB entry 4I4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6SER 145
B
 PRO 6SER 145
C
 PRO 6SER 145
D
 PRO 6SER 145
E
 PRO 6SER 145
F
 PRO 6ARG 147
G
 ASN 5ASP 146
H
 ASN 5SER 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 4I4J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
27 46Right-handed alpha
Helix 3
3
A
47 55Right-handed alpha
Helix 4
4
A
134 141Right-handed alpha
Helix 5
5
B
27 47Right-handed alpha
Helix 6
6
B
47 55Right-handed alpha
Helix 7
7
B
134 140Right-handed alpha
Helix 8
8
B
141 145Right-handed 310
Helix 9
9
C
27 47Right-handed alpha
Helix 10
10
C
47 54Right-handed alpha
Helix 11
11
C
134 141Right-handed alpha
Helix 12
12
D
27 47Right-handed alpha
Helix 13
13
D
47 55Right-handed alpha
Helix 14
14
D
134 141Right-handed alpha
Helix 15
15
E
16 20Right-handed 310
Helix 16
16
E
27 46Right-handed alpha
Helix 17
17
E
47 57Right-handed alpha
Helix 18
18
E
134 141Right-handed alpha
Helix 19
19
F
16 20Right-handed 310
Helix 20
20
F
27 46Right-handed alpha
Helix 21
21
F
47 57Right-handed alpha
Helix 22
22
F
134 141Right-handed alpha
Helix 23
23
F
142 145Right-handed 310
Helix 24
24
G
27 46Right-handed alpha
Helix 25
25
G
47 57Right-handed alpha
Helix 26
26
G
134 142Right-handed alpha
Helix 27
27
G
143 145Right-handed 310
Helix 28
28
H
27 47Right-handed alpha
Helix 29
29
H
47 56Right-handed alpha
Helix 30
30
H
134 141Right-handed alpha
Helix 31
31
H
142 145Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 4I4J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
78 88anti-parallel
Strand 3
A
92 102anti-parallel
Strand 4
A
108 122anti-parallel
Strand 5
A
58 69anti-parallel
Strand 6
B
59 69anti-parallel
Strand 7
B
108 122anti-parallel
Strand 8
B
92 102anti-parallel
Strand 9
B
78 88anti-parallel
Strand 10
B
9 14anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
108 122anti-parallel
Strand 3
A
58 69anti-parallel
Strand 4
B
59 69anti-parallel
Strand 5
B
108 122anti-parallel
Strand 6
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 14first strand
Strand 2
C
78 88anti-parallel
Strand 3
C
92 102anti-parallel
Strand 4
C
108 122anti-parallel
Strand 5
C
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 14first strand
Strand 2
C
78 88anti-parallel
Strand 3
C
92 102anti-parallel
Strand 4
C
108 122anti-parallel
Strand 5
C
59 69anti-parallel
Strand 6
D
59 69anti-parallel
Strand 7
D
108 121anti-parallel
Strand 8
D
92 102anti-parallel
Strand 9
D
78 88anti-parallel
Strand 10
D
9 14anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
9 14first strand
Strand 2
E
78 88anti-parallel
Strand 3
E
92 101anti-parallel
Strand 4
E
110 122anti-parallel
Strand 5
E
59 69anti-parallel
Strand 6
F
58 69anti-parallel
Strand 7
F
108 122anti-parallel
Strand 8
F
92 102anti-parallel
Strand 9
F
78 88anti-parallel
Strand 10
F
9 14anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
129 130first strand
Strand 2
E
110 122anti-parallel
Strand 3
E
59 69anti-parallel
Strand 4
F
58 69anti-parallel
Strand 5
F
108 122anti-parallel
Strand 6
F
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
9 14first strand
Strand 2
G
78 88anti-parallel
Strand 3
G
92 102anti-parallel
Strand 4
G
108 122anti-parallel
Strand 5
G
58 69anti-parallel
Strand 6
H
58 69anti-parallel
Strand 7
H
108 122anti-parallel
Strand 8
H
92 102anti-parallel
Strand 9
H
78 88anti-parallel
Strand 10
H
9 14anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
129 130first strand
Strand 2
G
108 122anti-parallel
Strand 3
G
58 69anti-parallel
Strand 4
H
58 69anti-parallel
Strand 5
H
108 122anti-parallel
Strand 6
H
129 130anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il