Analysis of interatomic Contacts of Structural Units in PDB entry:
4I6J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4I6J entry

There are 3 chains in PDB entry 4I6J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ASP 527
B
 ASP 35TRP 428
C
 SER 3GLU 162
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 4I6J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 44Right-handed alpha
Helix 2
2
A
66 86Right-handed alpha
Helix 3
3
A
101 110Right-handed alpha
Helix 4
4
A
121 137Right-handed alpha
Helix 5
5
A
152 160Right-handed alpha
Helix 6
6
A
167 178Right-handed alpha
Helix 7
7
A
190 195Right-handed alpha
Helix 8
8
A
201 208Right-handed 310
Helix 9
9
A
231 243Right-handed alpha
Helix 10
10
A
244 249Right-handed alpha
Helix 11
11
A
259 263Right-handed 310
Helix 12
12
A
269 276Right-handed alpha
Helix 13
13
A
279 296Right-handed alpha
Helix 14
14
A
301 304Right-handed 310
Helix 15
15
A
305 319Right-handed alpha
Helix 16
16
A
341 350Right-handed alpha
Helix 17
17
A
355 369Right-handed alpha
Helix 18
18
A
372 384Right-handed alpha
Helix 19
19
A
391 403Right-handed alpha
Helix 20
20
A
407 419Right-handed alpha
Helix 21
21
A
434 441Right-handed alpha
Helix 22
22
A
446 451Right-handed alpha
Helix 23
23
A
452 455Right-handed 310
Helix 24
24
A
458 463Right-handed alpha
Helix 25
25
A
464 468Right-handed 310
Helix 26
26
A
469 476Right-handed alpha
Helix 27
27
A
490 511Right-handed alpha
Helix 28
28
B
41 49Right-handed alpha
Helix 29
29
B
52 60Right-handed alpha
Helix 30
30
B
63 68Right-handed alpha
Helix 31
31
B
72 76Right-handed 310
Helix 32
32
B
95 107Right-handed alpha
Helix 33
33
B
120 132Right-handed alpha
Helix 34
34
B
150 155Right-handed 310
Helix 35
35
B
156 171Right-handed alpha
Helix 36
36
B
185 197Right-handed alpha
Helix 37
37
B
212 223Right-handed alpha
Helix 38
38
B
234 236Right-handed 310
Helix 39
39
B
237 246Right-handed alpha
Helix 40
40
B
273 284Right-handed alpha
Helix 41
41
B
320 329Right-handed alpha
Helix 42
42
B
347 358Right-handed alpha
Helix 43
43
B
373 383Right-handed alpha
Helix 44
44
B
384 387Right-handed 310
Helix 45
45
B
404 417Right-handed alpha
Helix 46
46
C
54 61Right-handed alpha
Helix 47
47
C
96 110Right-handed alpha
Helix 48
48
C
114 128Right-handed alpha
Helix 49
49
C
131 138Right-handed alpha
Helix 50
50
C
147 159Right-handed alpha
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There are 4 sheets in PDB entry 4I6J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 95first strand
Strand 2
A
49 55parallel
Strand 3
A
23 26parallel
Strand 4
A
113 117parallel
Strand 5
A
141 145parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
112 117parallel
Strand 3
B
141 146parallel
Strand 4
B
176 178parallel
Strand 5
B
202 204parallel
Strand 6
B
228 232parallel
Strand 7
B
254 260parallel
Strand 8
B
288 294parallel
Strand 9
B
312 315parallel
Strand 10
B
336 339parallel
Strand 11
B
363 366parallel
Strand 12
B
389 392parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 372first strand
Strand 2
B
397 398parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
15 16anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il