Analysis of interatomic Contacts of Structural Units in PDB entry:
4I79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4I79 entry

There are 3 chains in PDB entry 4I79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4SER 380
B
 ILE 4SER 380
C
 UNK 330UNK 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 4I79

There are 14 sheets in PDB entry 4I79. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
371 375anti-parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
353 359anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
66 73anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 82first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
97 102anti-parallel
Strand 4
A
109 115anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 140first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
152 157anti-parallel
Strand 4
A
165 168anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 180first strand
Strand 2
A
185 190anti-parallel
Strand 3
A
194 199anti-parallel
Strand 4
A
209 212anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 225first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
242 246anti-parallel
Strand 4
A
255 257anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 269first strand
Strand 2
A
276 281anti-parallel
Strand 3
A
286 290anti-parallel
Strand 4
A
341 344anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
371 375anti-parallel
Strand 3
B
362 367anti-parallel
Strand 4
B
353 359anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
31 36anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
65 73anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 82first strand
Strand 2
B
87 92anti-parallel
Strand 3
B
97 103anti-parallel
Strand 4
B
108 115anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 140first strand
Strand 2
B
143 148anti-parallel
Strand 3
B
153 157anti-parallel
Strand 4
B
165 167anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 180first strand
Strand 2
B
185 190anti-parallel
Strand 3
B
194 199anti-parallel
Strand 4
B
209 212anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 225first strand
Strand 2
B
232 237anti-parallel
Strand 3
B
242 246anti-parallel
Strand 4
B
255 257anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
264 269first strand
Strand 2
B
276 281anti-parallel
Strand 3
B
286 290anti-parallel
Strand 4
B
341 344anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il