Analysis of interatomic Contacts of Structural Units in PDB entry:
4II7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4II7 entry

There are 4 chains in PDB entry 4II7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ILE 513
B	SER 2	ILE 513
C	SER 2	ILE 513
D	SER 2	ILE 513

There are 84 helices in PDB entry 4II7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	11	Right-handed alpha
Helix 2	2	A	20	25	Right-handed 310
Helix 3	3	A	65	78	Right-handed alpha
Helix 4	4	A	95	102	Right-handed alpha
Helix 5	5	A	112	125	Right-handed alpha
Helix 6	6	A	127	129	Right-handed 310
Helix 7	7	A	130	136	Right-handed alpha
Helix 8	8	A	168	183	Right-handed alpha
Helix 9	9	A	230	238	Right-handed alpha
Helix 10	10	A	241	253	Right-handed alpha
Helix 11	11	A	267	276	Right-handed alpha
Helix 12	12	A	277	279	Right-handed 310
Helix 13	13	A	316	325	Right-handed alpha
Helix 14	14	A	340	350	Right-handed alpha
Helix 15	15	A	363	373	Right-handed alpha
Helix 16	16	A	379	384	Right-handed alpha
Helix 17	17	A	445	451	Right-handed alpha
Helix 18	18	A	451	457	Right-handed alpha
Helix 19	19	A	463	483	Right-handed alpha
Helix 20	20	A	487	502	Right-handed alpha
Helix 21	21	A	502	511	Right-handed alpha
Helix 22	22	B	3	10	Right-handed alpha
Helix 23	23	B	20	25	Right-handed 310
Helix 24	24	B	65	79	Right-handed alpha
Helix 25	25	B	95	105	Right-handed alpha
Helix 26	26	B	112	126	Right-handed alpha
Helix 27	27	B	127	129	Right-handed 310
Helix 28	28	B	130	136	Right-handed alpha
Helix 29	29	B	168	182	Right-handed alpha
Helix 30	30	B	230	237	Right-handed alpha
Helix 31	31	B	241	253	Right-handed alpha
Helix 32	32	B	268	276	Right-handed alpha
Helix 33	33	B	277	279	Right-handed 310
Helix 34	34	B	316	325	Right-handed alpha
Helix 35	35	B	339	350	Right-handed alpha
Helix 36	36	B	363	373	Right-handed alpha
Helix 37	37	B	379	384	Right-handed alpha
Helix 38	38	B	445	451	Right-handed alpha
Helix 39	39	B	451	456	Right-handed alpha
Helix 40	40	B	459	461	Right-handed 310
Helix 41	41	B	462	483	Right-handed alpha
Helix 42	42	B	487	502	Right-handed alpha
Helix 43	43	B	502	512	Right-handed alpha
Helix 44	44	C	3	11	Right-handed alpha
Helix 45	45	C	20	25	Right-handed 310
Helix 46	46	C	65	78	Right-handed alpha
Helix 47	47	C	95	105	Right-handed alpha
Helix 48	48	C	112	126	Right-handed alpha
Helix 49	49	C	127	129	Right-handed 310
Helix 50	50	C	130	136	Right-handed alpha
Helix 51	51	C	168	183	Right-handed alpha
Helix 52	52	C	230	238	Right-handed alpha
Helix 53	53	C	241	253	Right-handed alpha
Helix 54	54	C	267	277	Right-handed alpha
Helix 55	55	C	316	325	Right-handed alpha
Helix 56	56	C	340	351	Right-handed alpha
Helix 57	57	C	363	373	Right-handed alpha
Helix 58	58	C	382	386	Right-handed 310
Helix 59	59	C	445	451	Right-handed alpha
Helix 60	60	C	451	457	Right-handed alpha
Helix 61	61	C	459	462	Right-handed 310
Helix 62	62	C	463	483	Right-handed alpha
Helix 63	63	C	487	502	Right-handed alpha
Helix 64	64	C	502	512	Right-handed alpha
Helix 65	65	D	3	11	Right-handed alpha
Helix 66	66	D	20	25	Right-handed 310
Helix 67	67	D	65	79	Right-handed alpha
Helix 68	68	D	95	102	Right-handed alpha
Helix 69	69	D	112	126	Right-handed alpha
Helix 70	70	D	127	129	Right-handed 310
Helix 71	71	D	130	136	Right-handed alpha
Helix 72	72	D	168	183	Right-handed alpha
Helix 73	73	D	230	238	Right-handed alpha
Helix 74	74	D	241	253	Right-handed alpha
Helix 75	75	D	267	277	Right-handed alpha
Helix 76	76	D	316	325	Right-handed alpha
Helix 77	77	D	340	351	Right-handed alpha
Helix 78	78	D	363	373	Right-handed alpha
Helix 79	79	D	382	386	Right-handed 310
Helix 80	80	D	445	450	Right-handed alpha
Helix 81	81	D	451	456	Right-handed alpha
Helix 82	82	D	463	483	Right-handed alpha
Helix 83	83	D	487	502	Right-handed alpha
Helix 84	84	D	502	512	Right-handed alpha

There are 9 sheets in PDB entry 4II7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	31	37	parallel
Strand 3	A	40	45	anti-parallel
Strand 4	A	54	59	anti-parallel
Strand 5	A	158	166	parallel
Strand 6	A	148	154	anti-parallel
Strand 7	A	139	144	anti-parallel
Strand 8	A	218	222	anti-parallel
Strand 9	A	203	207	anti-parallel
Strand 10	A	193	197	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	305	first strand
Strand 2	A	285	289	parallel
Strand 3	A	331	334	parallel
Strand 4	A	354	359	parallel
Strand 5	A	258	261	parallel
Strand 6	A	388	396	parallel
Strand 7	A	402	415	anti-parallel
Strand 8	A	422	431	anti-parallel
Strand 9	A	436	439	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	31	37	parallel
Strand 3	B	40	45	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	158	166	parallel
Strand 6	B	148	154	anti-parallel
Strand 7	B	139	144	anti-parallel
Strand 8	B	218	222	anti-parallel
Strand 9	B	203	207	anti-parallel
Strand 10	B	193	197	anti-parallel

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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	305	first strand
Strand 2	B	285	289	parallel
Strand 3	B	331	334	parallel
Strand 4	B	354	359	parallel
Strand 5	B	258	261	parallel
Strand 6	B	388	391	parallel
Strand 7	B	408	415	anti-parallel
Strand 8	B	422	431	anti-parallel
Strand 9	B	436	439	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	402	404	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	31	37	parallel
Strand 3	C	40	45	anti-parallel
Strand 4	C	54	59	anti-parallel
Strand 5	C	158	166	parallel
Strand 6	C	148	154	anti-parallel
Strand 7	C	139	144	anti-parallel
Strand 8	C	218	222	anti-parallel
Strand 9	C	203	207	anti-parallel
Strand 10	C	193	197	anti-parallel

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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	305	first strand
Strand 2	C	285	289	parallel
Strand 3	C	331	336	parallel
Strand 4	C	354	360	parallel
Strand 5	C	258	262	parallel
Strand 6	C	388	396	parallel
Strand 7	C	402	415	anti-parallel
Strand 8	C	422	431	anti-parallel
Strand 9	C	436	439	anti-parallel

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There are 10 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	31	37	parallel
Strand 3	D	40	45	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	158	166	parallel
Strand 6	D	148	154	anti-parallel
Strand 7	D	139	144	anti-parallel
Strand 8	D	218	222	anti-parallel
Strand 9	D	203	207	anti-parallel
Strand 10	D	193	197	anti-parallel

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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	305	first strand
Strand 2	D	285	289	parallel
Strand 3	D	331	334	parallel
Strand 4	D	354	359	parallel
Strand 5	D	258	261	parallel
Strand 6	D	388	396	parallel
Strand 7	D	402	415	anti-parallel
Strand 8	D	422	431	anti-parallel
Strand 9	D	436	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4II7

Analysis of interatomic Contacts of Structural Units in PDB entry:
4II7