Analysis of interatomic Contacts of Structural Units in PDB entry:
4IIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IIJ entry

There are 2 chains in PDB entry 4IIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 437
B
 MET 1ASP 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 92 helices in PDB entry 4IIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 28Right-handed alpha
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
74 81Right-handed alpha
Helix 4
4
A
88 90Right-handed 310
Helix 5
5
A
102 108Right-handed alpha
Helix 6
6
A
108 127Right-handed alpha
Helix 7
7
A
143 161Right-handed alpha
Helix 8
8
A
182 195Right-handed alpha
Helix 9
9
A
196 198Right-handed 310
Helix 10
10
A
206 218Right-handed alpha
Helix 11
11
A
223 244Right-handed alpha
Helix 12
12
A
251 260Right-handed alpha
Helix 13
13
A
287 295Right-handed alpha
Helix 14
14
A
296 301Right-handed 310
Helix 15
15
A
306 310Right-handed 310
Helix 16
16
A
324 339Right-handed alpha
Helix 17
17
A
384 400Right-handed alpha
Helix 18
18
A
404 410Right-handed alpha
Helix 19
19
A
414 437Right-handed alpha
Helix 20
20
B
10 28Right-handed alpha
Helix 21
21
B
41 48Right-handed alpha
Helix 22
22
B
49 51Right-handed 310
Helix 23
23
B
72 81Right-handed alpha
Helix 24
24
B
83 87Right-handed 310
Helix 25
25
B
88 90Right-handed 310
Helix 26
26
B
102 108Right-handed alpha
Helix 27
27
B
109 128Right-handed alpha
Helix 28
28
B
144 161Right-handed alpha
Helix 29
29
B
174 178Right-handed 310
Helix 30
30
B
182 198Right-handed alpha
Helix 31
31
B
206 216Right-handed alpha
Helix 32
32
B
223 239Right-handed alpha
Helix 33
33
B
239 244Right-handed alpha
Helix 34
34
B
251 260Right-handed alpha
Helix 35
35
B
287 295Right-handed alpha
Helix 36
36
B
297 301Right-handed 310
Helix 37
37
B
306 310Right-handed 310
Helix 38
38
B
324 338Right-handed alpha
Helix 39
39
B
384 400Right-handed alpha
Helix 40
40
B
405 410Right-handed alpha
Helix 41
41
B
414 435Right-handed alpha
Helix 42
42
C
10 29Right-handed alpha
Helix 43
43
C
47 51Right-handed 310
Helix 44
44
C
72 81Right-handed alpha
Helix 45
45
C
88 90Right-handed 310
Helix 46
46
C
102 108Right-handed alpha
Helix 47
47
C
110 113Right-handed 310
Helix 48
48
C
114 127Right-handed alpha
Helix 49
49
C
143 162Right-handed alpha
Helix 50
50
C
182 195Right-handed alpha
Helix 51
51
C
196 198Right-handed 310
Helix 52
52
C
206 217Right-handed alpha
Helix 53
53
C
223 244Right-handed alpha
Helix 54
54
C
251 260Right-handed alpha
Helix 55
55
C
277 282Right-handed alpha
Helix 56
56
C
287 295Right-handed alpha
Helix 57
57
C
296 301Right-handed 310
Helix 58
58
C
306 310Right-handed 310
Helix 59
59
C
324 339Right-handed alpha
Helix 60
60
C
384 400Right-handed alpha
Helix 61
61
C
404 410Right-handed alpha
Helix 62
62
C
414 435Right-handed alpha
Helix 63
63
D
10 28Right-handed alpha
Helix 64
64
D
40 46Right-handed 310
Helix 65
65
D
48 51Right-handed 310
Helix 66
66
D
71 79Right-handed alpha
Helix 67
67
D
80 85Right-handed 310
Helix 68
68
D
88 90Right-handed 310
Helix 69
69
D
102 108Right-handed alpha
Helix 70
70
D
109 127Right-handed alpha
Helix 71
71
D
144 161Right-handed alpha
Helix 72
72
D
182 198Right-handed alpha
Helix 73
73
D
206 215Right-handed alpha
Helix 74
74
D
223 244Right-handed alpha
Helix 75
75
D
251 260Right-handed alpha
Helix 76
76
D
287 296Right-handed alpha
Helix 77
77
D
297 301Right-handed 310
Helix 78
78
D
306 310Right-handed 310
Helix 79
79
D
324 339Right-handed alpha
Helix 80
80
D
340 343Right-handed 310
Helix 81
81
D
384 400Right-handed alpha
Helix 82
82
D
404 410Right-handed alpha
Helix 83
83
D
414 438Right-handed alpha
Helix 84
84
E
46 142Right-handed alpha
Helix 85
85
F
11 23Right-handed alpha
Helix 86
86
F
48 52Right-handed 310
Helix 87
87
F
68 73Right-handed alpha
Helix 88
88
F
73 84Right-handed alpha
Helix 89
89
F
264 275Right-handed alpha
Helix 90
90
F
278 283Right-handed alpha
Helix 91
91
F
283 303Right-handed alpha
Helix 92
92
F
342 354Right-handed alpha
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There are 13 sheets in PDB entry 4IIJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
350 356parallel
Strand 5
E
17 23anti-parallel
Strand 6
E
7 14anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
3 9parallel
Strand 4
B
132 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
4 9parallel
Strand 4
C
134 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 205parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 273first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
352 356parallel
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There are 10 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
65 69parallel
Strand 3
D
3 9parallel
Strand 4
D
132 140parallel
Strand 5
D
165 172parallel
Strand 6
D
200 205parallel
Strand 7
D
267 273parallel
Strand 8
D
373 381anti-parallel
Strand 9
D
312 321anti-parallel
Strand 10
D
351 356parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 56first strand
Strand 2
D
60 63anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 29first strand
Strand 2
F
2 6parallel
Strand 3
F
39 41parallel
Strand 4
F
61 62parallel
Strand 5
F
310 311parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 223anti-parallel
Strand 3
F
199 207anti-parallel
Strand 4
F
313 321anti-parallel
Strand 5
F
327 333anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
261 263first strand
Strand 2
F
220 223anti-parallel
Strand 3
F
199 207anti-parallel
Strand 4
F
213 216anti-parallel
Strand 5
F
375 377anti-parallel
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