Analysis of interatomic Contacts of Structural Units in PDB entry:
4IJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IJK entry

There are 4 chains in PDB entry 4IJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0MET 247
B
 MET 1TYR 246
C
 MET 1MET 247
D
 ALA 0TYR 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4IJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 28Right-handed alpha
Helix 2
2
A
39 53Right-handed alpha
Helix 3
3
A
66 82Right-handed alpha
Helix 4
4
A
98 102Right-handed 310
Helix 5
5
A
103 131Right-handed alpha
Helix 6
6
A
142 148Right-handed alpha
Helix 7
7
A
152 174Right-handed alpha
Helix 8
8
A
203 208Right-handed 310
Helix 9
9
A
215 228Right-handed alpha
Helix 10
10
A
229 232Right-handed 310
Helix 11
11
B
15 28Right-handed alpha
Helix 12
12
B
39 53Right-handed alpha
Helix 13
13
B
66 82Right-handed alpha
Helix 14
14
B
98 102Right-handed 310
Helix 15
15
B
103 131Right-handed alpha
Helix 16
16
B
152 174Right-handed alpha
Helix 17
17
B
215 228Right-handed alpha
Helix 18
18
B
229 232Right-handed 310
Helix 19
19
C
15 28Right-handed alpha
Helix 20
20
C
39 53Right-handed alpha
Helix 21
21
C
66 82Right-handed alpha
Helix 22
22
C
98 102Right-handed 310
Helix 23
23
C
103 131Right-handed alpha
Helix 24
24
C
142 148Right-handed alpha
Helix 25
25
C
152 174Right-handed alpha
Helix 26
26
C
204 208Right-handed 310
Helix 27
27
C
215 228Right-handed alpha
Helix 28
28
C
229 232Right-handed 310
Helix 29
29
D
15 28Right-handed alpha
Helix 30
30
D
39 53Right-handed alpha
Helix 31
31
D
66 82Right-handed alpha
Helix 32
32
D
98 102Right-handed 310
Helix 33
33
D
103 131Right-handed alpha
Helix 34
34
D
152 174Right-handed alpha
Helix 35
35
D
204 208Right-handed 310
Helix 36
36
D
215 228Right-handed alpha
Helix 37
37
D
229 232Right-handed 310
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There are 4 sheets in PDB entry 4IJK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
31 36parallel
Strand 3
A
7 10parallel
Strand 4
A
86 89parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
238 241parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
31 36parallel
Strand 3
B
7 10parallel
Strand 4
B
86 89parallel
Strand 5
B
135 140parallel
Strand 6
B
178 185parallel
Strand 7
B
238 241parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
31 36parallel
Strand 3
C
7 10parallel
Strand 4
C
86 89parallel
Strand 5
C
135 140parallel
Strand 6
C
178 185parallel
Strand 7
C
238 241parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
31 36parallel
Strand 3
D
7 10parallel
Strand 4
D
86 89parallel
Strand 5
D
135 140parallel
Strand 6
D
178 185parallel
Strand 7
D
238 241parallel
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