Analysis of interatomic Contacts of Structural Units in PDB entry:
4IJP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IJP entry

There are 4 chains in PDB entry 4IJP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 670PRO 848
A
 LEU 850GLU 1005
B
 TRP 668PRO 848
B
 LEU 850GLU 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4IJP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
708 710Right-handed 310
Helix 2
2
A
722 743Right-handed alpha
Helix 3
3
A
774 782Right-handed alpha
Helix 4
4
A
788 809Right-handed alpha
Helix 5
5
A
817 819Right-handed 310
Helix 6
6
A
852 856Right-handed 310
Helix 7
7
A
857 863Right-handed alpha
Helix 8
8
A
868 885Right-handed alpha
Helix 9
9
A
893 906Right-handed alpha
Helix 10
10
A
909 916Right-handed alpha
Helix 11
11
A
918 922Right-handed 310
Helix 12
12
A
954 960Right-handed alpha
Helix 13
13
A
966 984Right-handed alpha
Helix 14
14
A
987 991Right-handed 310
Helix 15
15
A
993 999Right-handed alpha
Helix 16
16
B
708 710Right-handed 310
Helix 17
17
B
722 743Right-handed alpha
Helix 18
18
B
774 782Right-handed alpha
Helix 19
19
B
788 809Right-handed alpha
Helix 20
20
B
817 819Right-handed 310
Helix 21
21
B
852 856Right-handed 310
Helix 22
22
B
857 863Right-handed alpha
Helix 23
23
B
868 885Right-handed alpha
Helix 24
24
B
893 906Right-handed alpha
Helix 25
25
B
909 916Right-handed alpha
Helix 26
26
B
918 923Right-handed alpha
Helix 27
27
B
954 961Right-handed alpha
Helix 28
28
B
966 984Right-handed alpha
Helix 29
29
B
993 999Right-handed alpha
Helix 30
30
B
1000 1005Right-handed alpha
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There are 8 sheets in PDB entry 4IJP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 683first strand
Strand 2
A
687 692anti-parallel
Strand 3
A
701 706anti-parallel
Strand 4
A
713 718anti-parallel
Strand 5
A
762 767anti-parallel
Strand 6
A
753 759anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
772 773first strand
Strand 2
A
821 823anti-parallel
Strand 3
A
830 832anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 812first strand
Strand 2
A
839 840anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
929 933first strand
Strand 2
A
942 946anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
682 683first strand
Strand 2
B
687 694anti-parallel
Strand 3
B
699 706anti-parallel
Strand 4
B
713 719anti-parallel
Strand 5
B
762 767anti-parallel
Strand 6
B
753 759anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
772 773first strand
Strand 2
B
821 823anti-parallel
Strand 3
B
830 832anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
811 812first strand
Strand 2
B
839 840anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
929 932first strand
Strand 2
B
943 946anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il