Analysis of interatomic Contacts of Structural Units in PDB entry:
4IJY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IJY entry

There is 1 chain in PDB entry 4IJY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 22ASP 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 4IJY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 76Right-handed 310
Helix 2
2
A
168 172Right-handed 310
Helix 3
3
A
174 185Right-handed alpha
Helix 4
4
A
192 196Right-handed alpha
Helix 5
5
A
255 260Right-handed 310
Helix 6
6
A
279 281Right-handed 310
Helix 7
7
A
297 299Right-handed 310
Helix 8
8
A
316 323Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 4IJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 148first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
283 296parallel
Strand 4
A
301 312anti-parallel
Strand 5
A
245 253parallel
Strand 6
A
235 239anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
52 55anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
68 69anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
81 89anti-parallel
Strand 4
A
154 163anti-parallel
Strand 5
A
211 218anti-parallel
Strand 6
A
227 233anti-parallel
Strand 7
A
272 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
268 270anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il