Analysis of interatomic Contacts of Structural Units in PDB entry:
4IMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IMY entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 4IMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8TYR 185
A
 ASN 187THR 330
B
 ASN 8ASN 257
C
 VAL 8ILE 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 4IMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 17Right-handed 310
Helix 2
2
A
60 73Right-handed alpha
Helix 3
3
A
110 116Right-handed alpha
Helix 4
4
A
122 143Right-handed alpha
Helix 5
5
A
151 153Right-handed 310
Helix 6
6
A
191 195Right-handed 310
Helix 7
7
A
196 201Right-handed alpha
Helix 8
8
A
208 225Right-handed alpha
Helix 9
9
A
233 246Right-handed alpha
Helix 10
10
A
260 265Right-handed alpha
Helix 11
11
A
274 280Right-handed alpha
Helix 12
12
A
285 296Right-handed alpha
Helix 13
13
A
299 303Right-handed 310
Helix 14
14
A
305 311Right-handed alpha
Helix 15
15
A
312 316Right-handed 310
Helix 16
16
A
324 329Right-handed 310
Helix 17
17
B
15 21Right-handed alpha
Helix 18
18
B
22 27Right-handed alpha
Helix 19
19
B
30 53Right-handed alpha
Helix 20
20
B
55 70Right-handed alpha
Helix 21
21
B
79 95Right-handed alpha
Helix 22
22
B
100 113Right-handed alpha
Helix 23
23
B
123 144Right-handed alpha
Helix 24
24
B
152 164Right-handed alpha
Helix 25
25
B
167 185Right-handed alpha
Helix 26
26
B
186 190Right-handed 310
Helix 27
27
B
192 209Right-handed alpha
Helix 28
28
B
220 225Right-handed 310
Helix 29
29
B
230 248Right-handed alpha
Helix 30
30
B
251 256Right-handed alpha
Helix 31
31
C
15 17Right-handed 310
Helix 32
32
C
60 73Right-handed alpha
Helix 33
33
C
110 116Right-handed alpha
Helix 34
34
C
122 143Right-handed alpha
Helix 35
35
C
151 153Right-handed 310
Helix 36
36
C
191 195Right-handed 310
Helix 37
37
C
196 201Right-handed alpha
Helix 38
38
C
208 225Right-handed alpha
Helix 39
39
C
233 246Right-handed alpha
Helix 40
40
C
260 265Right-handed alpha
Helix 41
41
C
274 280Right-handed alpha
Helix 42
42
C
285 296Right-handed alpha
Helix 43
43
C
299 303Right-handed 310
Helix 44
44
C
305 311Right-handed alpha
Helix 45
45
C
312 316Right-handed 310
Helix 46
46
C
324 329Right-handed 310
Helix 47
47
D
7 11Right-handed 310
Helix 48
48
D
15 21Right-handed alpha
Helix 49
49
D
22 27Right-handed alpha
Helix 50
50
D
30 53Right-handed alpha
Helix 51
51
D
55 70Right-handed alpha
Helix 52
52
D
79 95Right-handed alpha
Helix 53
53
D
100 113Right-handed alpha
Helix 54
54
D
123 144Right-handed alpha
Helix 55
55
D
152 164Right-handed alpha
Helix 56
56
D
167 185Right-handed alpha
Helix 57
57
D
186 190Right-handed 310
Helix 58
58
D
192 209Right-handed alpha
Helix 59
59
D
220 225Right-handed 310
Helix 60
60
D
230 248Right-handed alpha
Helix 61
61
E
15 17Right-handed 310
Helix 62
62
E
60 73Right-handed alpha
Helix 63
63
E
110 116Right-handed alpha
Helix 64
64
E
122 143Right-handed alpha
Helix 65
65
E
151 153Right-handed 310
Helix 66
66
E
191 195Right-handed 310
Helix 67
67
E
196 201Right-handed alpha
Helix 68
68
E
208 225Right-handed alpha
Helix 69
69
E
233 246Right-handed alpha
Helix 70
70
E
260 265Right-handed alpha
Helix 71
71
E
274 280Right-handed alpha
Helix 72
72
E
285 296Right-handed alpha
Helix 73
73
E
299 303Right-handed 310
Helix 74
74
E
305 311Right-handed alpha
Helix 75
75
E
312 316Right-handed 310
Helix 76
76
E
324 329Right-handed 310
Helix 77
77
F
15 21Right-handed alpha
Helix 78
78
F
22 27Right-handed alpha
Helix 79
79
F
30 53Right-handed alpha
Helix 80
80
F
55 70Right-handed alpha
Helix 81
81
F
79 95Right-handed alpha
Helix 82
82
F
100 113Right-handed alpha
Helix 83
83
F
123 144Right-handed alpha
Helix 84
84
F
152 164Right-handed alpha
Helix 85
85
F
167 185Right-handed alpha
Helix 86
86
F
186 190Right-handed 310
Helix 87
87
F
192 209Right-handed alpha
Helix 88
88
F
220 225Right-handed 310
Helix 89
89
F
230 248Right-handed alpha
Helix 90
90
F
250 254Right-handed 310
Helix 91
91
G
46 56Right-handed alpha
Helix 92
92
G
58 63Right-handed alpha
Helix 93
93
G
64 66Right-handed 310
Helix 94
94
H
4 19Right-handed alpha
Helix 95
95
H
46 56Right-handed alpha
Helix 96
96
H
58 63Right-handed alpha
Helix 97
97
H
64 66Right-handed 310
Helix 98
98
I
46 56Right-handed alpha
Helix 99
99
I
58 63Right-handed alpha
Helix 100
100
I
64 66Right-handed 310
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There are 12 sheets in PDB entry 4IMY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 24first strand
Strand 2
A
33 38anti-parallel
Strand 3
A
44 49anti-parallel
Strand 4
A
99 104anti-parallel
Strand 5
A
81 86anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 109first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
163 165anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
G
39 40anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 25first strand
Strand 2
C
33 38anti-parallel
Strand 3
C
44 49anti-parallel
Strand 4
C
99 104anti-parallel
Strand 5
C
81 86anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 109first strand
Strand 2
C
155 157anti-parallel
Strand 3
C
163 165anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 146first strand
Strand 2
C
172 173anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
210 211first strand
Strand 2
H
39 40anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
19 27first strand
Strand 2
E
32 38anti-parallel
Strand 3
E
44 50anti-parallel
Strand 4
E
99 104anti-parallel
Strand 5
E
81 86anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
108 109first strand
Strand 2
E
155 157anti-parallel
Strand 3
E
163 165anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
145 146first strand
Strand 2
E
172 173anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
210 211first strand
Strand 2
I
39 40anti-parallel
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