Analysis of interatomic Contacts of Structural Units in PDB entry:
4INE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4INE entry

There are 2 chains in PDB entry 4INE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 435
B
 SER 2PHE 435
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 4INE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
32 44Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
80 97Right-handed alpha
Helix 5
5
A
114 126Right-handed alpha
Helix 6
6
A
146 152Right-handed alpha
Helix 7
7
A
177 185Right-handed alpha
Helix 8
8
A
188 200Right-handed alpha
Helix 9
9
A
207 217Right-handed alpha
Helix 10
10
A
218 220Right-handed 310
Helix 11
11
A
236 247Right-handed alpha
Helix 12
12
A
256 270Right-handed alpha
Helix 13
13
A
300 304Right-handed 310
Helix 14
14
A
306 317Right-handed alpha
Helix 15
15
A
337 348Right-handed alpha
Helix 16
16
A
353 365Right-handed alpha
Helix 17
17
A
374 392Right-handed alpha
Helix 18
18
A
392 400Right-handed alpha
Helix 19
19
A
401 421Right-handed alpha
Helix 20
20
B
4 18Right-handed alpha
Helix 21
21
B
32 44Right-handed alpha
Helix 22
22
B
55 60Right-handed 310
Helix 23
23
B
80 97Right-handed alpha
Helix 24
24
B
114 126Right-handed alpha
Helix 25
25
B
146 152Right-handed alpha
Helix 26
26
B
177 185Right-handed alpha
Helix 27
27
B
188 200Right-handed alpha
Helix 28
28
B
207 217Right-handed alpha
Helix 29
29
B
218 220Right-handed 310
Helix 30
30
B
236 247Right-handed alpha
Helix 31
31
B
256 270Right-handed alpha
Helix 32
32
B
300 304Right-handed 310
Helix 33
33
B
306 317Right-handed alpha
Helix 34
34
B
337 348Right-handed alpha
Helix 35
35
B
353 365Right-handed alpha
Helix 36
36
B
374 391Right-handed alpha
Helix 37
37
B
392 398Right-handed alpha
Helix 38
38
B
401 421Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4INE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
26 29parallel
Strand 3
A
65 71parallel
Strand 4
A
98 106parallel
Strand 5
A
158 167anti-parallel
Strand 6
A
135 145anti-parallel
Strand 7
A
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
26 29parallel
Strand 3
A
65 71parallel
Strand 4
A
98 106parallel
Strand 5
A
158 167anti-parallel
Strand 6
A
135 145anti-parallel
Strand 7
A
275 279anti-parallel
Strand 8
A
249 254parallel
Strand 9
A
227 231parallel
Strand 10
A
292 298parallel
Strand 11
A
318 331parallel
Strand 12
A
424 432anti-parallel
Strand 13
A
367 373anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
26 29parallel
Strand 3
B
65 71parallel
Strand 4
B
98 106parallel
Strand 5
B
158 167anti-parallel
Strand 6
B
135 145anti-parallel
Strand 7
B
128 129anti-parallel
Back to list of sheets
Back to top of page

There are 13 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
26 29parallel
Strand 3
B
65 71parallel
Strand 4
B
98 106parallel
Strand 5
B
158 167anti-parallel
Strand 6
B
135 145anti-parallel
Strand 7
B
275 279anti-parallel
Strand 8
B
249 254parallel
Strand 9
B
227 231parallel
Strand 10
B
292 298parallel
Strand 11
B
318 331parallel
Strand 12
B
424 432anti-parallel
Strand 13
B
367 373anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il