Analysis of interatomic Contacts of Structural Units in PDB entry:
4IQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IQD entry

There are 2 chains in PDB entry 4IQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6LYS 295
B
 GLN 8THR 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 4IQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
35 46Right-handed alpha
Helix 3
3
A
53 61Right-handed alpha
Helix 4
4
A
70 86Right-handed alpha
Helix 5
5
A
99 113Right-handed alpha
Helix 6
6
A
139 154Right-handed alpha
Helix 7
7
A
170 185Right-handed alpha
Helix 8
8
A
196 207Right-handed alpha
Helix 9
9
A
225 232Right-handed alpha
Helix 10
10
A
241 262Right-handed alpha
Helix 11
11
A
264 271Right-handed 310
Helix 12
12
A
273 281Right-handed alpha
Helix 13
13
A
282 295Right-handed alpha
Helix 14
14
B
10 24Right-handed alpha
Helix 15
15
B
35 46Right-handed alpha
Helix 16
16
B
53 61Right-handed alpha
Helix 17
17
B
70 86Right-handed alpha
Helix 18
18
B
99 113Right-handed alpha
Helix 19
19
B
139 154Right-handed alpha
Helix 20
20
B
164 169Right-handed alpha
Helix 21
21
B
170 185Right-handed alpha
Helix 22
22
B
196 207Right-handed alpha
Helix 23
23
B
225 232Right-handed alpha
Helix 24
24
B
241 262Right-handed alpha
Helix 25
25
B
264 271Right-handed 310
Helix 26
26
B
273 281Right-handed alpha
Helix 27
27
B
282 294Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4IQD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
236 239parallel
Strand 3
A
212 214parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
89 92parallel
Strand 3
A
117 121parallel
Strand 4
A
158 163parallel
Strand 5
A
188 191parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
236 239parallel
Strand 3
B
212 214parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
89 92parallel
Strand 3
B
117 121parallel
Strand 4
B
158 163parallel
Strand 5
B
188 191parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il