Analysis of interatomic Contacts of Structural Units in PDB entry:
4IVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IVC entry

There are 4 chains in PDB entry 4IVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 853GLU 1033
A
 THR 1036LYS 1154
B
 VAL 865GLU 1033
B
 THR 1036LYS 1154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 4IVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
871 873Right-handed 310
Helix 2
2
A
919 931Right-handed alpha
Helix 3
3
A
963 968Right-handed alpha
Helix 4
4
A
971 975Right-handed 310
Helix 5
5
A
976 997Right-handed alpha
Helix 6
6
A
1005 1007Right-handed 310
Helix 7
7
A
1044 1048Right-handed 310
Helix 8
8
A
1049 1056Right-handed alpha
Helix 9
9
A
1059 1076Right-handed alpha
Helix 10
10
A
1079 1082Right-handed 310
Helix 11
11
A
1083 1093Right-handed alpha
Helix 12
12
A
1096 1098Right-handed 310
Helix 13
13
A
1099 1110Right-handed alpha
Helix 14
14
A
1121 1132Right-handed alpha
Helix 15
15
A
1135 1139Right-handed 310
Helix 16
16
A
1141 1154Right-handed alpha
Helix 17
17
B
871 873Right-handed 310
Helix 18
18
B
918 931Right-handed alpha
Helix 19
19
B
963 972Right-handed alpha
Helix 20
20
B
976 997Right-handed alpha
Helix 21
21
B
1005 1007Right-handed 310
Helix 22
22
B
1044 1048Right-handed 310
Helix 23
23
B
1049 1055Right-handed alpha
Helix 24
24
B
1060 1076Right-handed alpha
Helix 25
25
B
1079 1082Right-handed 310
Helix 26
26
B
1083 1093Right-handed alpha
Helix 27
27
B
1096 1098Right-handed 310
Helix 28
28
B
1099 1110Right-handed alpha
Helix 29
29
B
1121 1132Right-handed alpha
Helix 30
30
B
1135 1139Right-handed 310
Helix 31
31
B
1141 1154Right-handed alpha
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There are 8 sheets in PDB entry 4IVC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
875 883first strand
Strand 2
A
887 894anti-parallel
Strand 3
A
903 910anti-parallel
Strand 4
A
953 957anti-parallel
Strand 5
A
940 944anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
999 1000first strand
Strand 2
A
1026 1027anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1009 1013first strand
Strand 2
A
1016 1019anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1035 1036first strand
Strand 2
A
1057 1058anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
875 883first strand
Strand 2
B
887 894anti-parallel
Strand 3
B
904 910anti-parallel
Strand 4
B
953 957anti-parallel
Strand 5
B
940 944anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
999 1000first strand
Strand 2
B
1026 1027anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1009 1013first strand
Strand 2
B
1016 1019anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1034 1036first strand
Strand 2
B
1057 1059anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il