Analysis of interatomic Contacts of Structural Units in PDB entry:
4IW9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IW9 entry

There are 3 chains in PDB entry 4IW9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 209
B
 ASN -5GLY 209
C
 GLN -1GLY 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4IW9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
37 40Right-handed 310
Helix 3
3
A
41 48Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
78 81Right-handed 310
Helix 6
6
A
87 104Right-handed alpha
Helix 7
7
A
104 114Right-handed alpha
Helix 8
8
A
116 120Right-handed 310
Helix 9
9
A
122 149Right-handed alpha
Helix 10
10
A
159 176Right-handed alpha
Helix 11
11
A
184 194Right-handed alpha
Helix 12
12
A
195 205Right-handed alpha
Helix 13
13
B
11 26Right-handed alpha
Helix 14
14
B
37 40Right-handed 310
Helix 15
15
B
41 48Right-handed alpha
Helix 16
16
B
65 77Right-handed alpha
Helix 17
17
B
78 81Right-handed 310
Helix 18
18
B
87 104Right-handed alpha
Helix 19
19
B
105 108Right-handed 310
Helix 20
20
B
109 114Right-handed alpha
Helix 21
21
B
116 120Right-handed 310
Helix 22
22
B
122 148Right-handed alpha
Helix 23
23
B
159 176Right-handed alpha
Helix 24
24
B
183 194Right-handed alpha
Helix 25
25
B
195 205Right-handed alpha
Helix 26
26
C
11 26Right-handed alpha
Helix 27
27
C
35 40Right-handed alpha
Helix 28
28
C
41 46Right-handed alpha
Helix 29
29
C
65 77Right-handed alpha
Helix 30
30
C
78 81Right-handed 310
Helix 31
31
C
87 104Right-handed alpha
Helix 32
32
C
104 109Right-handed alpha
Helix 33
33
C
109 114Right-handed alpha
Helix 34
34
C
124 149Right-handed alpha
Helix 35
35
C
159 175Right-handed alpha
Helix 36
36
C
184 195Right-handed alpha
Helix 37
37
C
195 205Right-handed alpha
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There are 3 sheets in PDB entry 4IW9. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
2 5parallel
Strand 3
A
55 58anti-parallel
Strand 4
A
61 64anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 33first strand
Strand 2
B
2 5parallel
Strand 3
B
55 58anti-parallel
Strand 4
B
61 64anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 33first strand
Strand 2
C
1 5parallel
Strand 3
C
55 58anti-parallel
Strand 4
C
61 64anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il