Analysis of interatomic Contacts of Structural Units in PDB entry:
4IZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4IZD entry

There are 2 chains in PDB entry 4IZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 254
B
 THR 2ALA 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4IZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 7Right-handed alpha
Helix 2
2
A
28 32Right-handed 310
Helix 3
3
A
36 50Right-handed alpha
Helix 4
4
A
72 80Right-handed alpha
Helix 5
5
A
82 103Right-handed alpha
Helix 6
6
A
117 125Right-handed alpha
Helix 7
7
A
139 145Right-handed 310
Helix 8
8
A
151 161Right-handed alpha
Helix 9
9
A
161 172Right-handed alpha
Helix 10
10
A
177 184Right-handed alpha
Helix 11
11
A
193 207Right-handed alpha
Helix 12
12
A
209 217Right-handed alpha
Helix 13
13
A
218 225Right-handed alpha
Helix 14
14
A
227 243Right-handed alpha
Helix 15
15
A
245 254Right-handed alpha
Helix 16
16
B
3 7Right-handed alpha
Helix 17
17
B
28 32Right-handed 310
Helix 18
18
B
36 50Right-handed alpha
Helix 19
19
B
72 80Right-handed alpha
Helix 20
20
B
82 103Right-handed alpha
Helix 21
21
B
117 125Right-handed alpha
Helix 22
22
B
139 145Right-handed 310
Helix 23
23
B
151 161Right-handed alpha
Helix 24
24
B
161 172Right-handed alpha
Helix 25
25
B
177 184Right-handed alpha
Helix 26
26
B
193 207Right-handed alpha
Helix 27
27
B
209 217Right-handed alpha
Helix 28
28
B
218 225Right-handed alpha
Helix 29
29
B
227 243Right-handed alpha
Helix 30
30
B
245 257Right-handed alpha
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There are 4 sheets in PDB entry 4IZD. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
21 26anti-parallel
Strand 3
A
57 62parallel
Strand 4
A
107 110parallel
Strand 5
A
128 131parallel
Strand 6
A
188 189parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 138parallel
Strand 3
A
175 176anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
21 26anti-parallel
Strand 3
B
57 62parallel
Strand 4
B
107 110parallel
Strand 5
B
128 131parallel
Strand 6
B
188 189parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 116first strand
Strand 2
B
136 138parallel
Strand 3
B
175 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il