Analysis of interatomic Contacts of Structural Units in PDB entry:
4J00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J00 entry

There are 4 chains in PDB entry 4J00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 298
B
 SER 2GLU 298
C
 T 1 C 24
D
 T 1 C 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 4J00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 11Right-handed alpha
Helix 2
2
A
14 29Right-handed alpha
Helix 3
3
A
34 57Right-handed alpha
Helix 4
4
A
61 68Right-handed alpha
Helix 5
5
A
71 87Right-handed alpha
Helix 6
6
A
100 105Right-handed alpha
Helix 7
7
A
105 114Right-handed alpha
Helix 8
8
A
132 136Right-handed 310
Helix 9
9
A
151 166Right-handed alpha
Helix 10
10
A
167 169Right-handed 310
Helix 11
11
A
179 193Right-handed alpha
Helix 12
12
A
220 242Right-handed alpha
Helix 13
13
A
261 281Right-handed alpha
Helix 14
14
B
6 12Right-handed alpha
Helix 15
15
B
14 29Right-handed alpha
Helix 16
16
B
34 57Right-handed alpha
Helix 17
17
B
60 69Right-handed alpha
Helix 18
18
B
71 87Right-handed alpha
Helix 19
19
B
100 105Right-handed alpha
Helix 20
20
B
105 114Right-handed alpha
Helix 21
21
B
129 137Right-handed alpha
Helix 22
22
B
151 166Right-handed alpha
Helix 23
23
B
179 194Right-handed alpha
Helix 24
24
B
215 219Right-handed 310
Helix 25
25
B
222 243Right-handed alpha
Helix 26
26
B
258 260Right-handed 310
Helix 27
27
B
261 280Right-handed alpha
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There are 3 sheets in PDB entry 4J00. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 200first strand
Strand 2
A
206 210anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 256first strand
Strand 2
B
287 296anti-parallel
Strand 3
A
286 296anti-parallel
Strand 4
B
249 257anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 200first strand
Strand 2
B
206 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il