Analysis of interatomic Contacts of Structural Units in PDB entry:
4J01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J01 entry

There are 6 chains in PDB entry 4J01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5GLU 298
B
 VAL 5GLU 298
C
 G 1 C 29
D
 G 1 C 29
E
 VAL 5GLU 298
F
 VAL 5ARG 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 4J01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
14 28Right-handed alpha
Helix 3
3
A
34 57Right-handed alpha
Helix 4
4
A
60 68Right-handed alpha
Helix 5
5
A
71 87Right-handed alpha
Helix 6
6
A
100 105Right-handed alpha
Helix 7
7
A
105 114Right-handed alpha
Helix 8
8
A
129 138Right-handed alpha
Helix 9
9
A
152 168Right-handed alpha
Helix 10
10
A
179 193Right-handed alpha
Helix 11
11
A
220 243Right-handed alpha
Helix 12
12
A
258 278Right-handed alpha
Helix 13
13
B
6 12Right-handed alpha
Helix 14
14
B
14 29Right-handed alpha
Helix 15
15
B
35 57Right-handed alpha
Helix 16
16
B
60 68Right-handed alpha
Helix 17
17
B
71 88Right-handed alpha
Helix 18
18
B
100 105Right-handed alpha
Helix 19
19
B
106 114Right-handed alpha
Helix 20
20
B
129 131Right-handed 310
Helix 21
21
B
132 139Right-handed alpha
Helix 22
22
B
151 169Right-handed alpha
Helix 23
23
B
179 193Right-handed alpha
Helix 24
24
B
215 219Right-handed 310
Helix 25
25
B
222 243Right-handed alpha
Helix 26
26
B
261 281Right-handed alpha
Helix 27
27
E
6 12Right-handed alpha
Helix 28
28
E
14 28Right-handed alpha
Helix 29
29
E
34 57Right-handed alpha
Helix 30
30
E
60 68Right-handed alpha
Helix 31
31
E
71 89Right-handed alpha
Helix 32
32
E
100 105Right-handed alpha
Helix 33
33
E
105 114Right-handed alpha
Helix 34
34
E
129 138Right-handed alpha
Helix 35
35
E
151 169Right-handed alpha
Helix 36
36
E
179 193Right-handed alpha
Helix 37
37
E
220 243Right-handed alpha
Helix 38
38
E
258 260Right-handed 310
Helix 39
39
E
261 281Right-handed alpha
Helix 40
40
F
6 12Right-handed alpha
Helix 41
41
F
14 28Right-handed alpha
Helix 42
42
F
34 57Right-handed alpha
Helix 43
43
F
60 68Right-handed alpha
Helix 44
44
F
71 87Right-handed alpha
Helix 45
45
F
100 105Right-handed alpha
Helix 46
46
F
105 114Right-handed alpha
Helix 47
47
F
129 140Right-handed alpha
Helix 48
48
F
151 167Right-handed alpha
Helix 49
49
F
179 193Right-handed alpha
Helix 50
50
F
221 243Right-handed alpha
Helix 51
51
F
258 262Right-handed 310
Helix 52
52
F
263 281Right-handed alpha
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There are 6 sheets in PDB entry 4J01. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
206 208anti-parallel
Strand 3
A
198 200anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 291first strand
Strand 2
B
252 255anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
207 210anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
196 198first strand
Strand 2
E
208 210anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
252 257first strand
Strand 2
F
286 295anti-parallel
Strand 3
E
289 296anti-parallel
Strand 4
F
249 250anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
196 200first strand
Strand 2
F
206 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il