Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J0B entry

There are 2 chains in PDB entry 4J0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 85LYS 718
B
 THR 85GLU 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 4J0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 117Right-handed alpha
Helix 2
2
A
123 125Right-handed 310
Helix 3
3
A
126 149Right-handed alpha
Helix 4
4
A
179 188Right-handed alpha
Helix 5
5
A
193 200Right-handed alpha
Helix 6
6
A
207 212Right-handed alpha
Helix 7
7
A
218 221Right-handed 310
Helix 8
8
A
222 226Right-handed alpha
Helix 9
9
A
274 280Right-handed 310
Helix 10
10
A
281 293Right-handed alpha
Helix 11
11
A
312 316Right-handed 310
Helix 12
12
A
322 335Right-handed alpha
Helix 13
13
A
396 400Right-handed 310
Helix 14
14
A
423 448Right-handed alpha
Helix 15
15
A
448 470Right-handed alpha
Helix 16
16
A
472 480Right-handed alpha
Helix 17
17
A
481 483Right-handed 310
Helix 18
18
A
498 503Right-handed alpha
Helix 19
19
A
519 524Right-handed alpha
Helix 20
20
A
526 532Right-handed alpha
Helix 21
21
A
546 555Right-handed alpha
Helix 22
22
A
592 602Right-handed alpha
Helix 23
23
A
629 634Right-handed alpha
Helix 24
24
A
663 676Right-handed alpha
Helix 25
25
A
679 695Right-handed alpha
Helix 26
26
A
701 703Right-handed 310
Helix 27
27
A
704 716Right-handed alpha
Helix 28
28
B
108 119Right-handed alpha
Helix 29
29
B
125 146Right-handed alpha
Helix 30
30
B
179 188Right-handed alpha
Helix 31
31
B
193 201Right-handed alpha
Helix 32
32
B
218 225Right-handed 310
Helix 33
33
B
274 280Right-handed 310
Helix 34
34
B
281 293Right-handed alpha
Helix 35
35
B
312 316Right-handed 310
Helix 36
36
B
317 321Right-handed 310
Helix 37
37
B
322 334Right-handed alpha
Helix 38
38
B
366 372Right-handed alpha
Helix 39
39
B
396 400Right-handed 310
Helix 40
40
B
422 448Right-handed alpha
Helix 41
41
B
448 470Right-handed alpha
Helix 42
42
B
472 481Right-handed alpha
Helix 43
43
B
497 505Right-handed alpha
Helix 44
44
B
519 525Right-handed alpha
Helix 45
45
B
526 533Right-handed alpha
Helix 46
46
B
546 555Right-handed alpha
Helix 47
47
B
565 572Right-handed alpha
Helix 48
48
B
573 575Right-handed 310
Helix 49
49
B
584 588Right-handed 310
Helix 50
50
B
590 605Right-handed alpha
Helix 51
51
B
629 637Right-handed alpha
Helix 52
52
B
663 673Right-handed alpha
Helix 53
53
B
676 695Right-handed alpha
Helix 54
54
B
701 716Right-handed alpha
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There are 10 sheets in PDB entry 4J0B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 104first strand
Strand 2
B
253 259anti-parallel
Strand 3
B
243 248anti-parallel
Strand 4
B
227 235anti-parallel
Strand 5
B
265 272anti-parallel
Strand 6
B
168 173anti-parallel
Strand 7
B
158 163anti-parallel
Strand 8
B
300 302parallel
Strand 9
B
305 306anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
B
189 190parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 306first strand
Strand 2
A
300 302anti-parallel
Strand 3
A
158 163parallel
Strand 4
A
168 173anti-parallel
Strand 5
A
265 272anti-parallel
Strand 6
A
227 235anti-parallel
Strand 7
A
243 248anti-parallel
Strand 8
A
253 260anti-parallel
Strand 9
B
95 104anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
B
106 107parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 348first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
403 407anti-parallel
Strand 4
A
378 382parallel
Strand 5
A
385 388anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
540 542anti-parallel
Strand 3
A
511 516parallel
Strand 4
A
560 564parallel
Strand 5
A
556 557anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 614first strand
Strand 2
A
655 659parallel
Strand 3
A
623 627anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 348first strand
Strand 2
B
354 361anti-parallel
Strand 3
B
403 407anti-parallel
Strand 4
B
378 382parallel
Strand 5
B
385 387anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 487first strand
Strand 2
B
539 542anti-parallel
Strand 3
B
511 516parallel
Strand 4
B
560 564parallel
Strand 5
B
556 557anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
611 614first strand
Strand 2
B
656 659parallel
Strand 3
B
623 626anti-parallel
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