Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J0F entry

There are 2 chains in PDB entry 4J0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 9TYR 296
B
 MET 8TYR 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4J0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 33Right-handed alpha
Helix 2
2
A
43 63Right-handed alpha
Helix 3
3
A
68 82Right-handed alpha
Helix 4
4
A
88 94Right-handed alpha
Helix 5
5
A
106 121Right-handed alpha
Helix 6
6
A
135 140Right-handed alpha
Helix 7
7
A
145 147Right-handed 310
Helix 8
8
A
173 187Right-handed alpha
Helix 9
9
A
201 220Right-handed alpha
Helix 10
10
A
223 236Right-handed alpha
Helix 11
11
A
240 249Right-handed alpha
Helix 12
12
A
249 264Right-handed alpha
Helix 13
13
A
273 282Right-handed alpha
Helix 14
14
A
286 290Right-handed 310
Helix 15
15
B
20 33Right-handed alpha
Helix 16
16
B
43 63Right-handed alpha
Helix 17
17
B
70 82Right-handed alpha
Helix 18
18
B
88 94Right-handed alpha
Helix 19
19
B
106 121Right-handed alpha
Helix 20
20
B
135 140Right-handed alpha
Helix 21
21
B
145 147Right-handed 310
Helix 22
22
B
173 187Right-handed alpha
Helix 23
23
B
201 219Right-handed alpha
Helix 24
24
B
223 236Right-handed alpha
Helix 25
25
B
240 249Right-handed alpha
Helix 26
26
B
249 264Right-handed alpha
Helix 27
27
B
267 271Right-handed 310
Helix 28
28
B
273 282Right-handed alpha
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There are 2 sheets in PDB entry 4J0F. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
36 40parallel
Strand 3
A
13 17parallel
Strand 4
A
98 101parallel
Strand 5
A
126 129parallel
Strand 6
A
149 153parallel
Strand 7
A
163 168anti-parallel
Strand 8
A
190 195parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
36 40parallel
Strand 3
B
13 17parallel
Strand 4
B
98 101parallel
Strand 5
B
126 129parallel
Strand 6
B
149 154parallel
Strand 7
B
163 168anti-parallel
Strand 8
B
190 195parallel
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