Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J0K entry

There are 2 chains in PDB entry 4J0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLN 469
B
 SER 0GLN 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4J0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
52 55Right-handed 310
Helix 3
3
A
94 104Right-handed alpha
Helix 4
4
A
130 146Right-handed alpha
Helix 5
5
A
163 175Right-handed alpha
Helix 6
6
A
178 180Right-handed 310
Helix 7
7
A
181 189Right-handed alpha
Helix 8
8
A
208 210Right-handed 310
Helix 9
9
A
211 221Right-handed alpha
Helix 10
10
A
251 273Right-handed alpha
Helix 11
11
A
290 309Right-handed alpha
Helix 12
12
A
313 317Right-handed 310
Helix 13
13
A
331 340Right-handed alpha
Helix 14
14
A
355 361Right-handed alpha
Helix 15
15
A
372 378Right-handed alpha
Helix 16
16
A
387 394Right-handed alpha
Helix 17
17
A
395 400Right-handed 310
Helix 18
18
A
424 437Right-handed alpha
Helix 19
19
A
456 469Right-handed alpha
Helix 20
20
B
8 12Right-handed 310
Helix 21
21
B
52 55Right-handed 310
Helix 22
22
B
94 105Right-handed alpha
Helix 23
23
B
130 146Right-handed alpha
Helix 24
24
B
153 155Right-handed 310
Helix 25
25
B
163 175Right-handed alpha
Helix 26
26
B
178 180Right-handed 310
Helix 27
27
B
181 189Right-handed alpha
Helix 28
28
B
208 221Right-handed alpha
Helix 29
29
B
251 272Right-handed alpha
Helix 30
30
B
290 309Right-handed alpha
Helix 31
31
B
313 317Right-handed 310
Helix 32
32
B
331 340Right-handed alpha
Helix 33
33
B
355 361Right-handed alpha
Helix 34
34
B
372 378Right-handed alpha
Helix 35
35
B
387 394Right-handed alpha
Helix 36
36
B
396 401Right-handed alpha
Helix 37
37
B
424 437Right-handed alpha
Helix 38
38
B
456 469Right-handed alpha
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There are 6 sheets in PDB entry 4J0K. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 19first strand
Strand 2
A
22 33anti-parallel
Strand 3
A
44 50anti-parallel
Strand 4
A
107 111anti-parallel
Strand 5
A
69 72parallel
Strand 6
A
157 160parallel
Strand 7
A
199 203parallel
Strand 8
A
410 414parallel
Strand 9
A
440 444parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
246 249anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 323first strand
Strand 2
A
326 330anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 19first strand
Strand 2
B
22 33anti-parallel
Strand 3
B
44 50anti-parallel
Strand 4
B
107 111anti-parallel
Strand 5
B
69 72parallel
Strand 6
B
157 162parallel
Strand 7
B
199 203parallel
Strand 8
B
410 414parallel
Strand 9
B
440 444parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 235first strand
Strand 2
B
241 249anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
320 323first strand
Strand 2
B
326 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il