Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J0M entry

There are 2 chains in PDB entry 4J0M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 31SER 757
B
 ASP 31SER 757
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 4J0M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 45Right-handed alpha
Helix 2
2
A
64 68Right-handed 310
Helix 3
3
A
94 100Right-handed alpha
Helix 4
4
A
139 150Right-handed alpha
Helix 5
5
A
218 220Right-handed 310
Helix 6
6
A
246 250Right-handed 310
Helix 7
7
A
294 303Right-handed 310
Helix 8
8
A
319 325Right-handed 310
Helix 9
9
A
341 346Right-handed alpha
Helix 10
10
A
347 350Right-handed 310
Helix 11
11
A
368 374Right-handed 310
Helix 12
12
A
419 425Right-handed 310
Helix 13
13
A
443 448Right-handed alpha
Helix 14
14
A
492 498Right-handed 310
Helix 15
15
A
516 522Right-handed 310
Helix 16
16
A
540 546Right-handed 310
Helix 17
17
A
564 569Right-handed 310
Helix 18
18
A
608 615Right-handed 310
Helix 19
19
A
656 662Right-handed 310
Helix 20
20
A
680 686Right-handed 310
Helix 21
21
A
704 710Right-handed 310
Helix 22
22
A
732 736Right-handed 310
Helix 23
23
A
737 742Right-handed 310
Helix 24
24
B
33 44Right-handed alpha
Helix 25
25
B
64 68Right-handed 310
Helix 26
26
B
94 100Right-handed alpha
Helix 27
27
B
139 150Right-handed alpha
Helix 28
28
B
218 220Right-handed 310
Helix 29
29
B
246 250Right-handed 310
Helix 30
30
B
294 301Right-handed 310
Helix 31
31
B
319 325Right-handed 310
Helix 32
32
B
341 346Right-handed alpha
Helix 33
33
B
347 350Right-handed 310
Helix 34
34
B
368 374Right-handed 310
Helix 35
35
B
419 425Right-handed 310
Helix 36
36
B
443 448Right-handed alpha
Helix 37
37
B
492 498Right-handed 310
Helix 38
38
B
516 522Right-handed 310
Helix 39
39
B
540 546Right-handed 310
Helix 40
40
B
564 569Right-handed 310
Helix 41
41
B
592 596Right-handed 310
Helix 42
42
B
608 615Right-handed 310
Helix 43
43
B
656 662Right-handed 310
Helix 44
44
B
680 686Right-handed 310
Helix 45
45
B
704 710Right-handed 310
Helix 46
46
B
732 736Right-handed 310
Helix 47
47
B
737 741Right-handed 310
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There are 20 sheets in PDB entry 4J0M. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
90 93anti-parallel
Strand 3
A
113 116parallel
Strand 4
A
136 137parallel
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There are 25 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
106 108parallel
Strand 4
A
129 131parallel
Strand 5
A
155 157parallel
Strand 6
A
179 181parallel
Strand 7
A
205 207parallel
Strand 8
A
230 232parallel
Strand 9
A
255 257parallel
Strand 10
A
281 283parallel
Strand 11
A
306 308parallel
Strand 12
A
330 332parallel
Strand 13
A
355 357parallel
Strand 14
A
379 381parallel
Strand 15
A
406 408parallel
Strand 16
A
430 432parallel
Strand 17
A
454 456parallel
Strand 18
A
479 481parallel
Strand 19
A
503 505parallel
Strand 20
A
527 529parallel
Strand 21
A
551 553parallel
Strand 22
A
643 645parallel
Strand 23
A
667 669parallel
Strand 24
A
691 693parallel
Strand 25
A
715 717parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 166first strand
Strand 2
A
186 188parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
237 239parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
337 338parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
386 388parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 441first strand
Strand 2
A
461 463parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 537first strand
Strand 2
A
558 559parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
600 603first strand
Strand 2
A
583 589anti-parallel
Strand 3
A
623 630anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
676 677first strand
Strand 2
A
698 701parallel
Strand 3
A
722 723parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 726first strand
Strand 2
A
747 748parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
90 93anti-parallel
Strand 3
B
113 116parallel
Strand 4
B
136 137parallel
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There are 25 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
79 83anti-parallel
Strand 3
B
106 108parallel
Strand 4
B
129 131parallel
Strand 5
B
155 157parallel
Strand 6
B
179 181parallel
Strand 7
B
205 207parallel
Strand 8
B
230 232parallel
Strand 9
B
255 257parallel
Strand 10
B
281 283parallel
Strand 11
B
306 308parallel
Strand 12
B
330 332parallel
Strand 13
B
355 357parallel
Strand 14
B
379 381parallel
Strand 15
B
406 408parallel
Strand 16
B
430 432parallel
Strand 17
B
454 456parallel
Strand 18
B
479 481parallel
Strand 19
B
503 505parallel
Strand 20
B
527 529parallel
Strand 21
B
551 553parallel
Strand 22
B
643 645parallel
Strand 23
B
667 669parallel
Strand 24
B
691 693parallel
Strand 25
B
715 717parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 216first strand
Strand 2
B
237 239parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
337 338parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
386 388parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
536 538first strand
Strand 2
B
558 560parallel
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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
600 603first strand
Strand 2
B
583 589anti-parallel
Strand 3
B
623 630anti-parallel
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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
676 677first strand
Strand 2
B
698 701parallel
Strand 3
B
722 723parallel
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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
725 726first strand
Strand 2
B
747 748parallel
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