Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4J0Q entry

There are 4 chains in PDB entry 4J0Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 9	GLU 397
B	SER 9	GLU 397
C	SER 9	GLU 397
D	SER 9	PHE 222

There are 52 helices in PDB entry 4J0Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	24	40	Right-handed alpha
Helix 2	2	A	84	95	Right-handed alpha
Helix 3	3	A	113	127	Right-handed alpha
Helix 4	4	A	137	141	Right-handed 310
Helix 5	5	A	143	161	Right-handed alpha
Helix 6	6	A	174	180	Right-handed alpha
Helix 7	7	A	183	187	Right-handed 310
Helix 8	8	A	188	203	Right-handed alpha
Helix 9	9	A	208	212	Right-handed 310
Helix 10	10	A	286	290	Right-handed 310
Helix 11	11	B	24	40	Right-handed alpha
Helix 12	12	B	84	95	Right-handed alpha
Helix 13	13	B	113	127	Right-handed alpha
Helix 14	14	B	137	141	Right-handed 310
Helix 15	15	B	143	161	Right-handed alpha
Helix 16	16	B	174	180	Right-handed alpha
Helix 17	17	B	183	187	Right-handed 310
Helix 18	18	B	188	203	Right-handed alpha
Helix 19	19	B	208	212	Right-handed 310
Helix 20	20	B	286	290	Right-handed 310
Helix 21	21	B	316	320	Right-handed 310
Helix 22	22	C	24	40	Right-handed alpha
Helix 23	23	C	84	95	Right-handed alpha
Helix 24	24	C	113	127	Right-handed alpha
Helix 25	25	C	137	141	Right-handed 310
Helix 26	26	C	143	161	Right-handed alpha
Helix 27	27	C	164	168	Right-handed 310
Helix 28	28	C	174	180	Right-handed alpha
Helix 29	29	C	183	187	Right-handed 310
Helix 30	30	C	188	203	Right-handed alpha
Helix 31	31	C	208	212	Right-handed 310
Helix 32	32	C	286	290	Right-handed 310
Helix 33	33	C	316	320	Right-handed 310
Helix 34	34	D	24	41	Right-handed alpha
Helix 35	35	D	84	95	Right-handed alpha
Helix 36	36	D	113	127	Right-handed alpha
Helix 37	37	D	137	141	Right-handed 310
Helix 38	38	D	143	161	Right-handed alpha
Helix 39	39	D	174	180	Right-handed alpha
Helix 40	40	D	183	187	Right-handed 310
Helix 41	41	D	188	203	Right-handed alpha
Helix 42	42	D	208	212	Right-handed 310
Helix 43	43	D	316	320	Right-handed 310
Helix 44	44	E	24	39	Right-handed alpha
Helix 45	45	E	84	95	Right-handed alpha
Helix 46	46	E	113	126	Right-handed alpha
Helix 47	47	E	137	141	Right-handed 310
Helix 48	48	E	143	161	Right-handed alpha
Helix 49	49	E	174	180	Right-handed alpha
Helix 50	50	E	183	187	Right-handed 310
Helix 51	51	E	188	203	Right-handed alpha
Helix 52	52	E	208	212	Right-handed 310

There are 26 sheets in PDB entry 4J0Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	76	81	anti-parallel
Strand 3	A	12	18	parallel
Strand 4	A	102	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	170	172	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	295	297	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	255	264	anti-parallel
Strand 5	A	277	283	anti-parallel
Strand 6	A	229	234	anti-parallel
Strand 7	A	221	223	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	295	297	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	255	264	anti-parallel
Strand 5	A	267	269	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	241	first strand
Strand 2	A	271	273	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	314	first strand
Strand 2	A	359	371	anti-parallel
Strand 3	A	339	346	anti-parallel
Strand 4	A	333	336	anti-parallel
Strand 5	A	377	382	anti-parallel
Strand 6	A	385	397	anti-parallel
Strand 7	A	304	314	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	353	354	anti-parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	12	18	parallel
Strand 4	B	101	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	170	172	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	295	297	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	255	259	anti-parallel
Strand 5	B	277	283	anti-parallel
Strand 6	B	228	234	anti-parallel
Strand 7	B	221	224	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	271	273	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	267	269	anti-parallel

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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	314	first strand
Strand 2	B	359	372	anti-parallel
Strand 3	B	339	346	anti-parallel
Strand 4	B	333	336	anti-parallel
Strand 5	B	377	382	anti-parallel
Strand 6	B	385	397	anti-parallel
Strand 7	B	303	314	anti-parallel

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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	76	81	anti-parallel
Strand 3	C	12	18	parallel
Strand 4	C	102	107	parallel
Strand 5	C	131	136	parallel
Strand 6	C	170	172	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	295	297	anti-parallel
Strand 3	C	245	249	anti-parallel
Strand 4	C	255	259	anti-parallel
Strand 5	C	277	283	anti-parallel
Strand 6	C	229	234	anti-parallel
Strand 7	C	221	223	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	241	first strand
Strand 2	C	271	273	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	264	first strand
Strand 2	C	267	269	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	314	first strand
Strand 2	C	359	371	anti-parallel
Strand 3	C	339	346	anti-parallel
Strand 4	C	333	336	anti-parallel
Strand 5	C	377	382	anti-parallel
Strand 6	C	385	397	anti-parallel
Strand 7	C	304	314	anti-parallel

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There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	76	81	anti-parallel
Strand 3	D	12	18	parallel
Strand 4	D	102	107	parallel
Strand 5	D	131	136	parallel
Strand 6	D	170	172	parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	217	first strand
Strand 2	D	295	297	anti-parallel
Strand 3	D	245	249	anti-parallel
Strand 4	D	255	258	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	224	first strand
Strand 2	D	228	234	anti-parallel
Strand 3	D	277	281	anti-parallel
Strand 4	D	262	264	anti-parallel
Strand 5	D	267	269	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	241	first strand
Strand 2	D	271	273	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	377	382	anti-parallel
Strand 3	D	385	397	anti-parallel
Strand 4	D	304	314	anti-parallel
Strand 5	D	359	371	anti-parallel
Strand 6	D	343	346	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	71	first strand
Strand 2	E	76	81	anti-parallel
Strand 3	E	12	18	parallel
Strand 4	E	101	107	parallel
Strand 5	E	130	136	parallel
Strand 6	E	170	172	parallel

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There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	217	first strand
Strand 2	E	295	297	anti-parallel
Strand 3	E	245	249	anti-parallel
Strand 4	E	255	264	anti-parallel
Strand 5	E	277	282	anti-parallel
Strand 6	E	228	234	anti-parallel
Strand 7	E	221	224	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	215	217	first strand
Strand 2	E	295	297	anti-parallel
Strand 3	E	245	249	anti-parallel
Strand 4	E	255	264	anti-parallel
Strand 5	E	267	269	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	239	241	first strand
Strand 2	E	271	273	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	314	first strand
Strand 2	E	359	372	anti-parallel
Strand 3	E	339	346	anti-parallel
Strand 4	E	333	336	anti-parallel
Strand 5	E	377	381	anti-parallel
Strand 6	E	386	397	anti-parallel
Strand 7	E	303	314	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4J0Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0Q