Analysis of interatomic Contacts of Structural Units in PDB entry:
4J0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J0X entry

There are 2 chains in PDB entry 4J0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 130GLN 570
B
 GLN 129GLN 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 4J0X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
217 221Right-handed 310
Helix 2
2
A
341 343Right-handed 310
Helix 3
3
A
364 373Right-handed alpha
Helix 4
4
B
217 221Right-handed 310
Helix 5
5
B
341 343Right-handed 310
Helix 6
6
B
364 373Right-handed alpha
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There are 14 sheets in PDB entry 4J0X. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 151first strand
Strand 2
A
562 569anti-parallel
Strand 3
A
537 544anti-parallel
Strand 4
A
520 527anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 163first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
195 200anti-parallel
Strand 4
A
209 215anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
259 264anti-parallel
Strand 4
A
269 275anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 288first strand
Strand 2
A
294 299anti-parallel
Strand 3
A
303 308anti-parallel
Strand 4
A
313 319anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
335 339anti-parallel
Strand 3
A
345 350anti-parallel
Strand 4
A
355 360anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 409first strand
Strand 2
A
412 417anti-parallel
Strand 3
A
422 426anti-parallel
Strand 4
A
434 436anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 480first strand
Strand 2
A
486 490anti-parallel
Strand 3
A
496 501anti-parallel
Strand 4
A
508 514anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 151first strand
Strand 2
B
562 569anti-parallel
Strand 3
B
537 544anti-parallel
Strand 4
B
520 527anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 163first strand
Strand 2
B
186 191anti-parallel
Strand 3
B
195 200anti-parallel
Strand 4
B
209 215anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 244first strand
Strand 2
B
250 255anti-parallel
Strand 3
B
259 264anti-parallel
Strand 4
B
269 275anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 288first strand
Strand 2
B
294 299anti-parallel
Strand 3
B
303 308anti-parallel
Strand 4
B
313 319anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
335 339anti-parallel
Strand 3
B
345 350anti-parallel
Strand 4
B
355 360anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 409first strand
Strand 2
B
412 417anti-parallel
Strand 3
B
422 426anti-parallel
Strand 4
B
434 436anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
477 480first strand
Strand 2
B
486 490anti-parallel
Strand 3
B
496 501anti-parallel
Strand 4
B
508 514anti-parallel
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