Analysis of interatomic Contacts of Structural Units in PDB entry:
4J15


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J15 entry

There are 2 chains in PDB entry 4J15 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 21ASP 495
B
 ALA 21ASP 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 4J15. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
25 27Right-handed 310
Helix 2
2
A
47 51Right-handed 310
Helix 3
3
A
52 56Right-handed 310
Helix 4
4
A
98 108Right-handed alpha
Helix 5
5
A
155 161Right-handed alpha
Helix 6
6
A
175 182Right-handed alpha
Helix 7
7
A
182 187Right-handed alpha
Helix 8
8
A
189 213Right-handed alpha
Helix 9
9
A
249 260Right-handed alpha
Helix 10
10
A
299 321Right-handed alpha
Helix 11
11
A
321 332Right-handed alpha
Helix 12
12
A
348 358Right-handed alpha
Helix 13
13
A
369 385Right-handed alpha
Helix 14
14
A
395 399Right-handed 310
Helix 15
15
A
434 445Right-handed alpha
Helix 16
16
A
449 451Right-handed 310
Helix 17
17
A
452 458Right-handed alpha
Helix 18
18
A
473 482Right-handed alpha
Helix 19
19
A
485 490Right-handed 310
Helix 20
20
B
25 27Right-handed 310
Helix 21
21
B
47 51Right-handed 310
Helix 22
22
B
52 56Right-handed 310
Helix 23
23
B
98 108Right-handed alpha
Helix 24
24
B
155 160Right-handed alpha
Helix 25
25
B
175 182Right-handed alpha
Helix 26
26
B
182 187Right-handed alpha
Helix 27
27
B
189 213Right-handed alpha
Helix 28
28
B
250 260Right-handed alpha
Helix 29
29
B
299 321Right-handed alpha
Helix 30
30
B
321 332Right-handed alpha
Helix 31
31
B
348 358Right-handed alpha
Helix 32
32
B
369 385Right-handed alpha
Helix 33
33
B
395 399Right-handed 310
Helix 34
34
B
434 445Right-handed alpha
Helix 35
35
B
452 458Right-handed alpha
Helix 36
36
B
473 481Right-handed alpha
Helix 37
37
B
485 490Right-handed 310
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There are 4 sheets in PDB entry 4J15. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
135 146parallel
Strand 3
A
113 122anti-parallel
Strand 4
A
59 72anti-parallel
Strand 5
A
75 82anti-parallel
Strand 6
A
85 92anti-parallel
Strand 7
A
135 146parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
264 271parallel
Strand 3
A
286 294anti-parallel
Strand 4
A
466 472anti-parallel
Strand 5
A
423 430anti-parallel
Strand 6
A
415 420anti-parallel
Strand 7
A
388 392anti-parallel
Strand 8
A
344 347parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
135 146parallel
Strand 3
B
113 122anti-parallel
Strand 4
B
59 72anti-parallel
Strand 5
B
75 82anti-parallel
Strand 6
B
85 92anti-parallel
Strand 7
B
135 146parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
264 271parallel
Strand 3
B
286 294anti-parallel
Strand 4
B
466 472anti-parallel
Strand 5
B
423 430anti-parallel
Strand 6
B
415 420anti-parallel
Strand 7
B
388 392anti-parallel
Strand 8
B
344 347parallel
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