Analysis of interatomic Contacts of Structural Units in PDB entry:
4J16


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J16 entry

There are 3 chains in PDB entry 4J16 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 372
B
 MET 1GLY 373
C
 LYS 274LEU 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 4J16. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 30Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
47 53Right-handed alpha
Helix 4
4
A
78 85Right-handed alpha
Helix 5
5
A
100 110Right-handed alpha
Helix 6
6
A
118 120Right-handed 310
Helix 7
7
A
123 129Right-handed 310
Helix 8
8
A
130 151Right-handed alpha
Helix 9
9
A
176 189Right-handed alpha
Helix 10
10
A
199 208Right-handed alpha
Helix 11
11
A
222 226Right-handed 310
Helix 12
12
A
231 248Right-handed alpha
Helix 13
13
A
268 273Right-handed alpha
Helix 14
14
A
285 289Right-handed 310
Helix 15
15
A
313 318Right-handed alpha
Helix 16
16
A
318 334Right-handed alpha
Helix 17
17
A
349 355Right-handed alpha
Helix 18
18
A
365 372Right-handed alpha
Helix 19
19
B
20 30Right-handed alpha
Helix 20
20
B
47 54Right-handed alpha
Helix 21
21
B
60 64Right-handed 310
Helix 22
22
B
78 84Right-handed alpha
Helix 23
23
B
96 110Right-handed alpha
Helix 24
24
B
118 120Right-handed 310
Helix 25
25
B
123 127Right-handed 310
Helix 26
26
B
130 151Right-handed alpha
Helix 27
27
B
176 189Right-handed alpha
Helix 28
28
B
199 209Right-handed alpha
Helix 29
29
B
235 246Right-handed alpha
Helix 30
30
B
268 273Right-handed alpha
Helix 31
31
B
285 289Right-handed 310
Helix 32
32
B
313 318Right-handed alpha
Helix 33
33
B
318 335Right-handed alpha
Helix 34
34
B
349 355Right-handed alpha
Helix 35
35
B
365 373Right-handed alpha
Helix 36
36
C
281 291Right-handed alpha
Helix 37
37
C
300 306Right-handed alpha
Helix 38
38
C
308 322Right-handed alpha
Helix 39
39
C
339 349Right-handed alpha
Helix 40
40
C
351 353Right-handed 310
Helix 41
41
C
358 362Right-handed alpha
Helix 42
42
C
363 368Right-handed 310
Helix 43
43
C
377 386Right-handed 310
Helix 44
44
C
398 402Right-handed 310
Helix 45
45
C
421 426Right-handed 310
Helix 46
46
C
435 449Right-handed alpha
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There are 9 sheets in PDB entry 4J16. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
33 37parallel
Strand 3
A
3 6parallel
Strand 4
A
70 72parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
Strand 7
A
356 359anti-parallel
Strand 8
A
362 363anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
163 165anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
192 196parallel
Strand 3
A
169 173parallel
Strand 4
A
251 254parallel
Strand 5
A
280 283parallel
Strand 6
A
306 309parallel
Strand 7
A
300 303anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
342 343anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
33 37parallel
Strand 3
B
3 6parallel
Strand 4
B
70 72parallel
Strand 5
B
90 93parallel
Strand 6
B
113 116parallel
Strand 7
B
356 359anti-parallel
Strand 8
B
362 363anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
163 165anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
192 196parallel
Strand 3
B
169 173parallel
Strand 4
B
251 254parallel
Strand 5
B
280 283parallel
Strand 6
B
306 309parallel
Strand 7
B
300 303anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
342 343anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 357first strand
Strand 2
C
325 330parallel
Strand 3
C
294 299parallel
Strand 4
C
370 374parallel
Strand 5
C
405 409parallel
Strand 6
C
429 433parallel
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