Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1G entry

There are 5 chains in PDB entry 4J1G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6ILE 233
D
 ASP 6ASN 232
C
 ASP 6ILE 233
B
 ASP 6ASN 232
E
 U 1 U 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 4J1G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
38 59Right-handed alpha
Helix 3
3
A
81 86Right-handed 310
Helix 4
4
A
95 112Right-handed alpha
Helix 5
5
A
113 124Right-handed alpha
Helix 6
6
A
126 131Right-handed alpha
Helix 7
7
A
135 138Right-handed 310
Helix 8
8
A
139 145Right-handed alpha
Helix 9
9
A
149 154Right-handed 310
Helix 10
10
A
159 173Right-handed alpha
Helix 11
11
A
175 185Right-handed 310
Helix 12
12
A
191 199Right-handed alpha
Helix 13
13
A
199 212Right-handed alpha
Helix 14
14
A
223 230Right-handed alpha
Helix 15
15
D
21 34Right-handed alpha
Helix 16
16
D
38 59Right-handed alpha
Helix 17
17
D
80 86Right-handed 310
Helix 18
18
D
94 112Right-handed alpha
Helix 19
19
D
113 124Right-handed alpha
Helix 20
20
D
126 131Right-handed alpha
Helix 21
21
D
135 138Right-handed 310
Helix 22
22
D
139 145Right-handed alpha
Helix 23
23
D
149 153Right-handed 310
Helix 24
24
D
159 173Right-handed alpha
Helix 25
25
D
175 180Right-handed 310
Helix 26
26
D
191 199Right-handed alpha
Helix 27
27
D
199 212Right-handed alpha
Helix 28
28
C
21 34Right-handed alpha
Helix 29
29
C
38 48Right-handed alpha
Helix 30
30
C
48 59Right-handed alpha
Helix 31
31
C
80 86Right-handed 310
Helix 32
32
C
94 112Right-handed alpha
Helix 33
33
C
113 124Right-handed alpha
Helix 34
34
C
126 131Right-handed alpha
Helix 35
35
C
135 138Right-handed 310
Helix 36
36
C
139 145Right-handed alpha
Helix 37
37
C
149 154Right-handed 310
Helix 38
38
C
159 173Right-handed alpha
Helix 39
39
C
175 177Right-handed 310
Helix 40
40
C
178 183Right-handed alpha
Helix 41
41
C
191 199Right-handed alpha
Helix 42
42
C
199 212Right-handed alpha
Helix 43
43
C
223 229Right-handed alpha
Helix 44
44
B
21 34Right-handed alpha
Helix 45
45
B
38 59Right-handed alpha
Helix 46
46
B
80 84Right-handed 310
Helix 47
47
B
94 112Right-handed alpha
Helix 48
48
B
113 124Right-handed alpha
Helix 49
49
B
126 131Right-handed alpha
Helix 50
50
B
135 138Right-handed 310
Helix 51
51
B
139 145Right-handed alpha
Helix 52
52
B
149 154Right-handed 310
Helix 53
53
B
159 173Right-handed alpha
Helix 54
54
B
175 180Right-handed 310
Helix 55
55
B
181 185Right-handed 310
Helix 56
56
B
191 199Right-handed alpha
Helix 57
57
B
199 212Right-handed alpha
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There are 4 sheets in PDB entry 4J1G. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
71 76parallel
Strand 3
A
63 68anti-parallel
Strand 4
B
9 10parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
C
63 68parallel
Strand 3
C
71 76anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 68first strand
Strand 2
D
71 76anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 68first strand
Strand 2
B
71 76anti-parallel
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