Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1J entry

There are 6 chains in PDB entry 4J1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 6VAL 235
A
 THR 3VAL 235
B
 PRO 5VAL 235
C
 SER 2VAL 235
H
 A 1 A 17
I
 A 1 A 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 60 helices in PDB entry 4J1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
21 34Right-handed alpha
Helix 2
2
D
35 37Right-handed 310
Helix 3
3
D
38 59Right-handed alpha
Helix 4
4
D
94 112Right-handed alpha
Helix 5
5
D
113 124Right-handed alpha
Helix 6
6
D
126 131Right-handed alpha
Helix 7
7
D
135 138Right-handed 310
Helix 8
8
D
139 146Right-handed alpha
Helix 9
9
D
149 154Right-handed 310
Helix 10
10
D
159 171Right-handed alpha
Helix 11
11
D
175 180Right-handed 310
Helix 12
12
D
191 199Right-handed alpha
Helix 13
13
D
199 212Right-handed alpha
Helix 14
14
D
213 218Right-handed 310
Helix 15
15
D
221 230Right-handed alpha
Helix 16
16
A
21 34Right-handed alpha
Helix 17
17
A
35 37Right-handed 310
Helix 18
18
A
38 59Right-handed alpha
Helix 19
19
A
94 112Right-handed alpha
Helix 20
20
A
113 124Right-handed alpha
Helix 21
21
A
126 131Right-handed alpha
Helix 22
22
A
135 138Right-handed 310
Helix 23
23
A
139 146Right-handed alpha
Helix 24
24
A
149 154Right-handed 310
Helix 25
25
A
159 173Right-handed alpha
Helix 26
26
A
175 180Right-handed 310
Helix 27
27
A
191 199Right-handed alpha
Helix 28
28
A
199 212Right-handed alpha
Helix 29
29
A
213 218Right-handed 310
Helix 30
30
A
221 230Right-handed alpha
Helix 31
31
B
21 34Right-handed alpha
Helix 32
32
B
35 37Right-handed 310
Helix 33
33
B
38 59Right-handed alpha
Helix 34
34
B
94 112Right-handed alpha
Helix 35
35
B
113 124Right-handed alpha
Helix 36
36
B
126 131Right-handed alpha
Helix 37
37
B
135 138Right-handed 310
Helix 38
38
B
139 146Right-handed alpha
Helix 39
39
B
149 154Right-handed 310
Helix 40
40
B
159 171Right-handed alpha
Helix 41
41
B
175 180Right-handed 310
Helix 42
42
B
191 199Right-handed alpha
Helix 43
43
B
199 212Right-handed alpha
Helix 44
44
B
221 230Right-handed alpha
Helix 45
45
C
21 34Right-handed alpha
Helix 46
46
C
35 37Right-handed 310
Helix 47
47
C
38 59Right-handed alpha
Helix 48
48
C
82 86Right-handed 310
Helix 49
49
C
94 112Right-handed alpha
Helix 50
50
C
113 124Right-handed alpha
Helix 51
51
C
126 131Right-handed alpha
Helix 52
52
C
135 138Right-handed 310
Helix 53
53
C
139 145Right-handed alpha
Helix 54
54
C
149 154Right-handed 310
Helix 55
55
C
159 171Right-handed alpha
Helix 56
56
C
175 180Right-handed 310
Helix 57
57
C
191 199Right-handed alpha
Helix 58
58
C
199 212Right-handed alpha
Helix 59
59
C
213 218Right-handed 310
Helix 60
60
C
221 230Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4J1J. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
8 10first strand
Strand 2
C
63 68parallel
Strand 3
C
71 76anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
71 76first strand
Strand 2
D
63 68anti-parallel
Strand 3
A
7 9parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
63 68anti-parallel
Strand 3
B
7 9parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
63 68anti-parallel
Strand 3
C
7 9parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il