Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1L entry

There is 1 chain in PDB entry 4J1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ASP 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 4J1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 28Right-handed 310
Helix 2
2
A
55 60Right-handed 310
Helix 3
3
A
80 101Right-handed alpha
Helix 4
4
A
101 114Right-handed alpha
Helix 5
5
A
226 243Right-handed alpha
Helix 6
6
A
269 276Right-handed alpha
Helix 7
7
A
278 283Right-handed 310
Helix 8
8
A
284 309Right-handed alpha
Helix 9
9
A
318 331Right-handed alpha
Helix 10
10
A
343 356Right-handed alpha
Helix 11
11
A
359 368Right-handed alpha
Helix 12
12
A
402 406Right-handed 310
Helix 13
13
A
408 415Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 4J1L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 154first strand
Strand 2
A
136 142anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
43 46anti-parallel
Strand 6
A
157 160parallel
Strand 7
A
194 197parallel
Strand 8
A
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
311 312parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
182 183anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
202 206anti-parallel
Strand 3
A
380 384anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
340 342anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il