Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1Q entry

There is 1 chain in PDB entry 4J1Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1LEU 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4J1Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 45Right-handed alpha
Helix 2
2
A
59 78Right-handed alpha
Helix 3
3
A
78 85Right-handed alpha
Helix 4
4
A
98 103Right-handed 310
Helix 5
5
A
104 116Right-handed alpha
Helix 6
6
A
134 144Right-handed alpha
Helix 7
7
A
191 206Right-handed alpha
Helix 8
8
A
219 232Right-handed alpha
Helix 9
9
A
245 260Right-handed alpha
Helix 10
10
A
282 291Right-handed alpha
Helix 11
11
A
294 304Right-handed alpha
Helix 12
12
A
318 323Right-handed alpha
Helix 13
13
A
327 350Right-handed alpha
Helix 14
14
A
375 385Right-handed alpha
Helix 15
15
A
390 405Right-handed alpha
Helix 16
16
A
415 424Right-handed alpha
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There is 1 sheet ( A) in PDB entry 4J1Q.

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
25 31parallel
Strand 3
A
87 94parallel
Strand 4
A
119 126parallel
Strand 5
A
150 154parallel
Strand 6
A
157 165anti-parallel
Strand 7
A
1 10anti-parallel
Strand 8
A
408 414anti-parallel
Strand 9
A
356 362parallel
Strand 10
A
311 317parallel
Strand 11
A
265 268parallel
Strand 12
A
183 187parallel
Strand 13
A
209 213parallel
Strand 14
A
235 238parallel
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