Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1T entry

There are 5 chains in PDB entry 4J1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -1GLY 373
B
 HIS -2GLY 373
C
 LYS 274LEU 450
D
 MET 1LEU 372
E
 MET 1TYR 45
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 93 helices in PDB entry 4J1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 31Right-handed alpha
Helix 2
2
A
41 45Right-handed 310
Helix 3
3
A
47 54Right-handed alpha
Helix 4
4
A
78 83Right-handed alpha
Helix 5
5
A
96 110Right-handed alpha
Helix 6
6
A
118 120Right-handed 310
Helix 7
7
A
123 129Right-handed 310
Helix 8
8
A
130 151Right-handed alpha
Helix 9
9
A
176 189Right-handed alpha
Helix 10
10
A
199 208Right-handed alpha
Helix 11
11
A
231 248Right-handed alpha
Helix 12
12
A
268 273Right-handed alpha
Helix 13
13
A
285 289Right-handed 310
Helix 14
14
A
313 318Right-handed alpha
Helix 15
15
A
318 334Right-handed alpha
Helix 16
16
A
349 355Right-handed alpha
Helix 17
17
A
365 373Right-handed alpha
Helix 18
18
B
20 31Right-handed alpha
Helix 19
19
B
41 45Right-handed 310
Helix 20
20
B
47 55Right-handed alpha
Helix 21
21
B
60 64Right-handed 310
Helix 22
22
B
78 83Right-handed alpha
Helix 23
23
B
96 110Right-handed alpha
Helix 24
24
B
118 120Right-handed 310
Helix 25
25
B
123 129Right-handed 310
Helix 26
26
B
130 151Right-handed alpha
Helix 27
27
B
176 189Right-handed alpha
Helix 28
28
B
199 209Right-handed alpha
Helix 29
29
B
231 248Right-handed alpha
Helix 30
30
B
268 273Right-handed alpha
Helix 31
31
B
285 289Right-handed 310
Helix 32
32
B
313 318Right-handed alpha
Helix 33
33
B
318 334Right-handed alpha
Helix 34
34
B
349 355Right-handed alpha
Helix 35
35
B
365 373Right-handed alpha
Helix 36
36
C
281 291Right-handed alpha
Helix 37
37
C
300 307Right-handed alpha
Helix 38
38
C
308 322Right-handed alpha
Helix 39
39
C
339 349Right-handed alpha
Helix 40
40
C
351 353Right-handed 310
Helix 41
41
C
358 362Right-handed alpha
Helix 42
42
C
363 368Right-handed 310
Helix 43
43
C
377 386Right-handed 310
Helix 44
44
C
398 402Right-handed 310
Helix 45
45
C
421 426Right-handed 310
Helix 46
46
C
435 448Right-handed alpha
Helix 47
47
D
20 30Right-handed alpha
Helix 48
48
D
41 45Right-handed 310
Helix 49
49
D
47 55Right-handed alpha
Helix 50
50
D
60 64Right-handed 310
Helix 51
51
D
78 84Right-handed alpha
Helix 52
52
D
100 110Right-handed alpha
Helix 53
53
D
118 120Right-handed 310
Helix 54
54
D
123 129Right-handed 310
Helix 55
55
D
130 151Right-handed alpha
Helix 56
56
D
176 190Right-handed alpha
Helix 57
57
D
199 208Right-handed alpha
Helix 58
58
D
231 248Right-handed alpha
Helix 59
59
D
268 273Right-handed alpha
Helix 60
60
D
285 289Right-handed 310
Helix 61
61
D
313 318Right-handed alpha
Helix 62
62
D
318 335Right-handed alpha
Helix 63
63
D
349 355Right-handed alpha
Helix 64
64
D
365 371Right-handed alpha
Helix 65
65
E
20 31Right-handed alpha
Helix 66
66
E
41 45Right-handed 310
Helix 67
67
E
47 54Right-handed alpha
Helix 68
68
E
60 64Right-handed 310
Helix 69
69
E
78 84Right-handed alpha
Helix 70
70
E
100 110Right-handed alpha
Helix 71
71
E
118 120Right-handed 310
Helix 72
72
E
126 129Right-handed 310
Helix 73
73
E
130 151Right-handed alpha
Helix 74
74
E
176 189Right-handed alpha
Helix 75
75
E
199 209Right-handed alpha
Helix 76
76
E
231 248Right-handed alpha
Helix 77
77
E
268 273Right-handed alpha
Helix 78
78
E
285 289Right-handed 310
Helix 79
79
E
313 318Right-handed alpha
Helix 80
80
E
318 335Right-handed alpha
Helix 81
81
E
349 355Right-handed alpha
Helix 82
82
E
365 372Right-handed alpha
Helix 83
83
F
281 291Right-handed alpha
Helix 84
84
F
300 307Right-handed alpha
Helix 85
85
F
308 322Right-handed alpha
Helix 86
86
F
339 349Right-handed alpha
Helix 87
87
F
351 353Right-handed 310
Helix 88
88
F
357 362Right-handed alpha
Helix 89
89
F
363 368Right-handed 310
Helix 90
90
F
377 386Right-handed 310
Helix 91
91
F
398 402Right-handed 310
Helix 92
92
F
421 426Right-handed 310
Helix 93
93
F
435 449Right-handed alpha
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There are 18 sheets in PDB entry 4J1T. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
33 37parallel
Strand 3
A
3 6parallel
Strand 4
A
70 72parallel
Strand 5
A
90 93parallel
Strand 6
A
113 116parallel
Strand 7
A
356 359anti-parallel
Strand 8
A
362 363anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
163 165anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
192 196parallel
Strand 3
A
169 173parallel
Strand 4
A
251 254parallel
Strand 5
A
280 283parallel
Strand 6
A
306 309parallel
Strand 7
A
300 303anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
338 339first strand
Strand 2
A
342 343anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
33 37parallel
Strand 3
B
3 6parallel
Strand 4
B
70 72parallel
Strand 5
B
90 93parallel
Strand 6
B
113 116parallel
Strand 7
B
356 359anti-parallel
Strand 8
B
362 363anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
163 165anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
192 196parallel
Strand 3
B
169 173parallel
Strand 4
B
251 254parallel
Strand 5
B
280 283parallel
Strand 6
B
306 309parallel
Strand 7
B
300 303anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 339first strand
Strand 2
B
342 343anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
355 357first strand
Strand 2
C
325 330parallel
Strand 3
C
294 299parallel
Strand 4
C
370 374parallel
Strand 5
C
405 408parallel
Strand 6
C
429 431parallel
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There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
33 37parallel
Strand 3
D
3 6parallel
Strand 4
D
70 72parallel
Strand 5
D
90 93parallel
Strand 6
D
113 116parallel
Strand 7
D
356 359anti-parallel
Strand 8
D
362 363anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
158 160first strand
Strand 2
D
163 165anti-parallel
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There are 7 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
192 196parallel
Strand 3
D
169 173parallel
Strand 4
D
251 254parallel
Strand 5
D
280 283parallel
Strand 6
D
306 309parallel
Strand 7
D
300 303anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
338 339first strand
Strand 2
D
342 343anti-parallel
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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
57 59first strand
Strand 2
E
33 37parallel
Strand 3
E
3 6parallel
Strand 4
E
70 72parallel
Strand 5
E
90 93parallel
Strand 6
E
113 116parallel
Strand 7
E
356 359anti-parallel
Strand 8
E
362 363anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
158 160first strand
Strand 2
E
163 165anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 213first strand
Strand 2
E
192 196parallel
Strand 3
E
169 173parallel
Strand 4
E
251 254parallel
Strand 5
E
280 283parallel
Strand 6
E
306 309parallel
Strand 7
E
300 303anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
338 339first strand
Strand 2
E
342 343anti-parallel
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There are 6 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
355 356first strand
Strand 2
F
325 329parallel
Strand 3
F
294 299parallel
Strand 4
F
370 374parallel
Strand 5
F
405 409parallel
Strand 6
F
429 433parallel
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