Analysis of interatomic Contacts of Structural Units in PDB entry:
4J1Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J1Y entry

There are 2 chains in PDB entry 4J1Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 292THR 684
B
 MET 292SER 683
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 4J1Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
445 449Right-handed 310
Helix 2
2
A
473 478Right-handed alpha
Helix 3
3
A
493 500Right-handed 310
Helix 4
4
A
519 523Right-handed 310
Helix 5
5
A
554 558Right-handed 310
Helix 6
6
A
626 630Right-handed 310
Helix 7
7
A
671 682Right-handed alpha
Helix 8
8
B
445 449Right-handed 310
Helix 9
9
B
473 478Right-handed alpha
Helix 10
10
B
519 523Right-handed 310
Helix 11
11
B
554 558Right-handed 310
Helix 12
12
B
591 595Right-handed 310
Helix 13
13
B
626 630Right-handed 310
Helix 14
14
B
671 681Right-handed alpha
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There are 16 sheets in PDB entry 4J1Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
311 312anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 305first strand
Strand 2
A
316 321anti-parallel
Strand 3
A
336 340anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
355 356anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
381 386anti-parallel
Strand 3
A
400 403anti-parallel
Strand 4
A
409 410anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
421 423anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 443first strand
Strand 2
A
583 590anti-parallel
Strand 3
A
616 620anti-parallel
Strand 4
A
662 667anti-parallel
Strand 5
A
647 653anti-parallel
Strand 6
A
635 639anti-parallel
Strand 7
A
564 569anti-parallel
Strand 8
A
583 590anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
502 503first strand
Strand 2
A
485 486anti-parallel
Strand 3
A
452 455anti-parallel
Strand 4
A
460 464anti-parallel
Strand 5
A
469 472anti-parallel
Strand 6
A
531 535anti-parallel
Strand 7
A
505 510anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 492first strand
Strand 2
A
580 581anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
293 294first strand
Strand 2
B
311 312anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 305first strand
Strand 2
B
316 321anti-parallel
Strand 3
B
336 340anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 334first strand
Strand 2
B
325 329anti-parallel
Strand 3
B
355 356anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
381 386anti-parallel
Strand 3
B
400 403anti-parallel
Strand 4
B
409 410anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 393first strand
Strand 2
B
421 423anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 503first strand
Strand 2
B
485 487anti-parallel
Strand 3
B
452 455anti-parallel
Strand 4
B
460 464anti-parallel
Strand 5
B
469 472anti-parallel
Strand 6
B
531 535anti-parallel
Strand 7
B
505 510anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 492first strand
Strand 2
B
580 581anti-parallel
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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 569first strand
Strand 2
B
583 590anti-parallel
Strand 3
B
616 620anti-parallel
Strand 4
B
662 667anti-parallel
Strand 5
B
647 653anti-parallel
Strand 6
B
635 639anti-parallel
Strand 7
B
564 569anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il