Analysis of interatomic Contacts of Structural Units in PDB entry:
4J24


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J24 entry

There are 8 chains in PDB entry 4J24 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 262HIS 498
B
 ASP 261HIS 498
C
 ALA 262HIS 498
D
 SER 264ALA 497
K
 ARG 4ASN 15
I
 ARG 4ASN 15
J
 ARG 4GLN 14
L
 ARG 4LEU 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 4J24. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
264 275Right-handed alpha
Helix 2
2
A
290 316Right-handed alpha
Helix 3
3
A
318 322Right-handed 310
Helix 4
4
A
323 348Right-handed alpha
Helix 5
5
A
365 370Right-handed 310
Helix 6
6
A
372 391Right-handed alpha
Helix 7
7
A
393 407Right-handed alpha
Helix 8
8
A
423 444Right-handed alpha
Helix 9
9
A
447 482Right-handed alpha
Helix 10
10
A
488 497Right-handed alpha
Helix 11
11
B
264 275Right-handed alpha
Helix 12
12
B
290 315Right-handed alpha
Helix 13
13
B
318 322Right-handed 310
Helix 14
14
B
323 348Right-handed alpha
Helix 15
15
B
365 370Right-handed 310
Helix 16
16
B
372 390Right-handed alpha
Helix 17
17
B
393 408Right-handed alpha
Helix 18
18
B
422 444Right-handed alpha
Helix 19
19
B
447 482Right-handed alpha
Helix 20
20
B
488 497Right-handed alpha
Helix 21
21
C
264 275Right-handed alpha
Helix 22
22
C
290 316Right-handed alpha
Helix 23
23
C
318 322Right-handed 310
Helix 24
24
C
323 348Right-handed alpha
Helix 25
25
C
365 370Right-handed 310
Helix 26
26
C
372 390Right-handed alpha
Helix 27
27
C
393 408Right-handed alpha
Helix 28
28
C
423 444Right-handed alpha
Helix 29
29
C
447 482Right-handed alpha
Helix 30
30
C
488 498Right-handed alpha
Helix 31
31
D
265 276Right-handed alpha
Helix 32
32
D
290 315Right-handed alpha
Helix 33
33
D
323 348Right-handed alpha
Helix 34
34
D
365 370Right-handed 310
Helix 35
35
D
372 390Right-handed alpha
Helix 36
36
D
393 408Right-handed alpha
Helix 37
37
D
424 444Right-handed alpha
Helix 38
38
D
447 482Right-handed alpha
Helix 39
39
D
488 497Right-handed alpha
Helix 40
40
K
5 14Right-handed alpha
Helix 41
41
I
5 14Right-handed alpha
Helix 42
42
J
5 14Right-handed alpha
Helix 43
43
L
5 13Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4J24. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 357first strand
Strand 2
A
360 363anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
353 357first strand
Strand 2
B
360 363anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
353 357first strand
Strand 2
C
360 363anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
353 357first strand
Strand 2
D
360 363anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il