Analysis of interatomic Contacts of Structural Units in PDB entry:
4J2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J2J entry

There are 6 chains in PDB entry 4J2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 569LYS 689
B
 PRO 569LYS 689
C
 LEU 571LEU 686
D
 ARG 30LEU 44
E
 PRO 29ALA 45
F
 PRO 29PHE 43
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4J2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
572 576Right-handed 310
Helix 2
2
A
592 594Right-handed 310
Helix 3
3
A
595 606Right-handed alpha
Helix 4
4
A
662 671Right-handed alpha
Helix 5
5
B
572 576Right-handed 310
Helix 6
6
B
592 594Right-handed 310
Helix 7
7
B
595 606Right-handed alpha
Helix 8
8
B
662 670Right-handed alpha
Helix 9
9
C
572 576Right-handed 310
Helix 10
10
C
592 594Right-handed 310
Helix 11
11
C
595 606Right-handed alpha
Helix 12
12
C
662 671Right-handed alpha
Helix 13
13
D
38 40Right-handed 310
Helix 14
14
E
38 40Right-handed 310
Helix 15
15
F
38 40Right-handed 310
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There are 11 sheets in PDB entry 4J2J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
580 582anti-parallel
Strand 3
D
35 36parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 646first strand
Strand 2
A
627 634anti-parallel
Strand 3
A
609 624anti-parallel
Strand 4
A
682 688anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
651 653first strand
Strand 2
A
657 660anti-parallel
Strand 3
A
675 676parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 571first strand
Strand 2
C
639 646anti-parallel
Strand 3
C
627 634anti-parallel
Strand 4
C
612 620anti-parallel
Strand 5
C
682 685anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
588 590first strand
Strand 2
B
580 582anti-parallel
Strand 3
E
35 36parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
609 611first strand
Strand 2
B
686 688anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
640 645first strand
Strand 2
B
628 634anti-parallel
Strand 3
B
614 621anti-parallel
Strand 4
B
682 683anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
651 653first strand
Strand 2
B
657 660anti-parallel
Strand 3
B
675 676parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
588 590first strand
Strand 2
C
580 582anti-parallel
Strand 3
F
34 36parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
651 653first strand
Strand 2
C
657 660anti-parallel
Strand 3
C
675 676parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 33first strand
Strand 2
E
31 33anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il