Analysis of interatomic Contacts of Structural Units in PDB entry:
4J2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J2Y entry

There are 2 chains in PDB entry 4J2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1ARG 174
B
 ILE 16ASN 245
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4J2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 88Right-handed 310
Helix 2
2
B
55 59Right-handed 310
Helix 3
3
B
164 172Right-handed alpha
Helix 4
4
B
234 245Right-handed alpha
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There are 5 sheets in PDB entry 4J2Y. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
166 171anti-parallel
Strand 4
A
15 21anti-parallel
Strand 5
A
57 60anti-parallel
Strand 6
A
75 78anti-parallel
Strand 7
A
93 98anti-parallel
Strand 8
A
103 106anti-parallel
Strand 9
A
155 159anti-parallel
Strand 10
A
143 149anti-parallel
Strand 11
A
127 132anti-parallel
Strand 12
A
119 124anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
103 106anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
43 46anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 124first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
143 149anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
43 46anti-parallel
Strand 6
A
30 33anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
156 161anti-parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
198 201anti-parallel
Strand 5
B
204 215anti-parallel
Strand 6
B
226 230anti-parallel
Strand 7
B
180 183anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
40 48anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
81 90anti-parallel
Strand 6
B
64 67anti-parallel
Strand 7
B
30 34anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il