Analysis of interatomic Contacts of Structural Units in PDB entry:
4J36


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J36 entry

There are 2 chains in PDB entry 4J36 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3MET 377
B
 HIS -1ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4J36. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
55 66Right-handed alpha
Helix 3
3
A
66 74Right-handed alpha
Helix 4
4
A
109 121Right-handed alpha
Helix 5
5
A
172 182Right-handed alpha
Helix 6
6
A
249 254Right-handed alpha
Helix 7
7
A
258 270Right-handed alpha
Helix 8
8
A
271 274Right-handed 310
Helix 9
9
A
278 288Right-handed alpha
Helix 10
10
A
313 318Right-handed alpha
Helix 11
11
A
325 344Right-handed alpha
Helix 12
12
A
347 376Right-handed alpha
Helix 13
13
B
11 24Right-handed alpha
Helix 14
14
B
55 64Right-handed alpha
Helix 15
15
B
69 75Right-handed alpha
Helix 16
16
B
109 121Right-handed alpha
Helix 17
17
B
172 180Right-handed alpha
Helix 18
18
B
248 256Right-handed alpha
Helix 19
19
B
258 270Right-handed alpha
Helix 20
20
B
271 274Right-handed 310
Helix 21
21
B
278 289Right-handed alpha
Helix 22
22
B
313 316Right-handed 310
Helix 23
23
B
320 324Right-handed 310
Helix 24
24
B
325 344Right-handed alpha
Helix 25
25
B
347 359Right-handed alpha
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There are 9 sheets in PDB entry 4J36. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 129first strand
Strand 2
A
27 32parallel
Strand 3
A
4 8parallel
Strand 4
A
163 166parallel
Strand 5
A
309 311parallel
Strand 6
A
303 304anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
105 108anti-parallel
Strand 3
A
78 79anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
220 225parallel
Strand 4
A
230 235anti-parallel
Strand 5
A
241 248anti-parallel
Strand 6
A
193 200anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 137first strand
Strand 2
A
143 149anti-parallel
Strand 3
A
155 161anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 300first strand
Strand 2
A
185 190anti-parallel
Strand 3
B
185 200anti-parallel
Strand 4
B
241 247anti-parallel
Strand 5
B
230 235anti-parallel
Strand 6
B
220 225anti-parallel
Strand 7
B
82 86parallel
Strand 8
B
92 96anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 300first strand
Strand 2
A
185 190anti-parallel
Strand 3
B
185 200anti-parallel
Strand 4
B
292 300anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
27 32parallel
Strand 3
B
4 8parallel
Strand 4
B
163 166parallel
Strand 5
B
309 311parallel
Strand 6
B
303 304anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
104 108anti-parallel
Strand 3
B
78 80anti-parallel
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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 137first strand
Strand 2
B
143 148anti-parallel
Strand 3
B
158 161anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il