Analysis of interatomic Contacts of Structural Units in PDB entry:
4J38


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J38 entry

There are 2 chains in PDB entry 4J38 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 40LYS 171
B
 THR 1106CYS 1228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 4J38. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 103Right-handed alpha
Helix 2
2
A
117 121Right-handed 310
Helix 3
3
A
163 171Right-handed alpha
Helix 4
4
B
1170 1177Right-handed alpha
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There are 5 sheets in PDB entry 4J38. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
128 136anti-parallel
Strand 3
A
139 145anti-parallel
Strand 4
A
158 162anti-parallel
Strand 5
A
43 50anti-parallel
Strand 6
A
59 68anti-parallel
Strand 7
A
71 78anti-parallel
Strand 8
A
81 88anti-parallel
Strand 9
A
110 111anti-parallel
Strand 10
A
124 125anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1118 1120first strand
Strand 2
B
1133 1138anti-parallel
Strand 3
B
1149 1153anti-parallel
Strand 4
B
1156 1157anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1143 1145first strand
Strand 2
B
1162 1164anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1167 1169first strand
Strand 2
B
1189 1191anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1179 1181first strand
Strand 2
B
1196 1201anti-parallel
Strand 3
B
1215 1217anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il