Analysis of interatomic Contacts of Structural Units in PDB entry:
4J3F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J3F entry

There are 8 chains in PDB entry 4J3F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 260
B
 GLY 2LEU 260
C
 GLY 2LEU 260
D
 GLY 2LEU 260
E
 GLY 2LEU 260
F
 GLY 2LEU 260
G
 GLY 2LEU 260
H
 GLY 2LEU 260
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are134 helices in PDB entry 4J3F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 31Right-handed alpha
Helix 2
2
A
40 42Right-handed 310
Helix 3
3
A
43 52Right-handed alpha
Helix 4
4
A
53 55Right-handed 310
Helix 5
5
A
66 81Right-handed alpha
Helix 6
6
A
95 99Right-handed 310
Helix 7
7
A
102 107Right-handed alpha
Helix 8
8
A
108 120Right-handed alpha
Helix 9
9
A
120 135Right-handed alpha
Helix 10
10
A
146 150Right-handed 310
Helix 11
11
A
156 178Right-handed alpha
Helix 12
12
A
179 181Right-handed 310
Helix 13
13
A
194 199Right-handed alpha
Helix 14
14
A
202 214Right-handed alpha
Helix 15
15
A
221 233Right-handed alpha
Helix 16
16
A
234 238Right-handed 310
Helix 17
17
A
250 254Right-handed 310
Helix 18
18
B
19 31Right-handed alpha
Helix 19
19
B
40 42Right-handed 310
Helix 20
20
B
43 52Right-handed alpha
Helix 21
21
B
53 55Right-handed 310
Helix 22
22
B
66 81Right-handed alpha
Helix 23
23
B
95 99Right-handed 310
Helix 24
24
B
102 107Right-handed alpha
Helix 25
25
B
108 120Right-handed alpha
Helix 26
26
B
120 135Right-handed alpha
Helix 27
27
B
146 150Right-handed 310
Helix 28
28
B
156 179Right-handed alpha
Helix 29
29
B
194 200Right-handed 310
Helix 30
30
B
202 214Right-handed alpha
Helix 31
31
B
221 233Right-handed alpha
Helix 32
32
B
234 238Right-handed 310
Helix 33
33
B
250 254Right-handed 310
Helix 34
34
C
19 31Right-handed alpha
Helix 35
35
C
40 42Right-handed 310
Helix 36
36
C
43 52Right-handed alpha
Helix 37
37
C
53 55Right-handed 310
Helix 38
38
C
66 81Right-handed alpha
Helix 39
39
C
95 99Right-handed 310
Helix 40
40
C
102 107Right-handed alpha
Helix 41
41
C
108 120Right-handed alpha
Helix 42
42
C
120 135Right-handed alpha
Helix 43
43
C
146 150Right-handed 310
Helix 44
44
C
156 178Right-handed alpha
Helix 45
45
C
179 181Right-handed 310
Helix 46
46
C
194 200Right-handed 310
Helix 47
47
C
202 214Right-handed alpha
Helix 48
48
C
221 232Right-handed alpha
Helix 49
49
C
233 238Right-handed 310
Helix 50
50
C
250 254Right-handed 310
Helix 51
51
D
19 31Right-handed alpha
Helix 52
52
D
40 42Right-handed 310
Helix 53
53
D
43 52Right-handed alpha
Helix 54
54
D
53 55Right-handed 310
Helix 55
55
D
66 81Right-handed alpha
Helix 56
56
D
95 99Right-handed 310
Helix 57
57
D
102 107Right-handed alpha
Helix 58
58
D
108 120Right-handed alpha
Helix 59
59
D
120 135Right-handed alpha
Helix 60
60
D
146 150Right-handed 310
Helix 61
61
D
156 178Right-handed alpha
Helix 62
62
D
179 181Right-handed 310
Helix 63
63
D
194 199Right-handed alpha
Helix 64
64
D
202 214Right-handed alpha
Helix 65
65
D
221 232Right-handed alpha
Helix 66
66
D
233 238Right-handed 310
Helix 67
67
D
250 254Right-handed 310
Helix 68
68
E
19 31Right-handed alpha
Helix 69
69
E
40 42Right-handed 310
Helix 70
70
E
43 52Right-handed alpha
Helix 71
71
E
53 55Right-handed 310
Helix 72
72
E
66 81Right-handed alpha
Helix 73
73
E
95 99Right-handed 310
Helix 74
74
E
102 107Right-handed alpha
Helix 75
75
E
108 120Right-handed alpha
Helix 76
76
E
120 135Right-handed alpha
Helix 77
77
E
146 150Right-handed 310
Helix 78
78
E
156 178Right-handed alpha
Helix 79
79
E
179 181Right-handed 310
Helix 80
80
E
194 198Right-handed 310
Helix 81
81
E
202 214Right-handed alpha
Helix 82
82
E
221 233Right-handed alpha
Helix 83
83
E
234 238Right-handed 310
Helix 84
84
E
250 254Right-handed 310
Helix 85
85
F
19 31Right-handed alpha
Helix 86
86
F
40 42Right-handed 310
Helix 87
87
F
43 52Right-handed alpha
Helix 88
88
F
53 55Right-handed 310
Helix 89
89
F
66 81Right-handed alpha
Helix 90
90
F
95 99Right-handed 310
Helix 91
91
F
102 107Right-handed alpha
Helix 92
92
F
108 120Right-handed alpha
Helix 93
93
F
120 135Right-handed alpha
Helix 94
94
F
146 150Right-handed 310
Helix 95
95
F
156 178Right-handed alpha
Helix 96
96
F
179 181Right-handed 310
Helix 97
97
F
194 200Right-handed 310
Helix 98
98
F
202 214Right-handed alpha
Helix 99
99
F
221 232Right-handed alpha
Helix 100
100
F
233 238Right-handed 310
Helix 101
101
F
250 254Right-handed 310
Helix 102
102
G
19 31Right-handed alpha
Helix 103
103
G
40 42Right-handed 310
Helix 104
104
G
43 52Right-handed alpha
Helix 105
105
G
53 55Right-handed 310
Helix 106
106
G
66 81Right-handed alpha
Helix 107
107
G
95 99Right-handed 310
Helix 108
108
G
102 107Right-handed alpha
Helix 109
109
G
108 120Right-handed alpha
Helix 110
110
G
120 135Right-handed alpha
Helix 111
111
G
146 150Right-handed 310
Helix 112
112
G
156 178Right-handed alpha
Helix 113
113
G
179 181Right-handed 310
Helix 114
114
G
194 199Right-handed alpha
Helix 115
115
G
202 214Right-handed alpha
Helix 116
116
G
221 232Right-handed alpha
Helix 117
117
G
233 238Right-handed 310
Helix 118
118
G
250 254Right-handed 310
Helix 119
119
H
19 31Right-handed alpha
Helix 120
120
H
40 42Right-handed 310
Helix 121
121
H
43 53Right-handed alpha
Helix 122
122
H
66 81Right-handed alpha
Helix 123
123
H
95 99Right-handed 310
Helix 124
124
H
102 107Right-handed alpha
Helix 125
125
H
108 120Right-handed alpha
Helix 126
126
H
120 135Right-handed alpha
Helix 127
127
H
146 150Right-handed 310
Helix 128
128
H
156 178Right-handed alpha
Helix 129
129
H
179 181Right-handed 310
Helix 130
130
H
194 198Right-handed 310
Helix 131
131
H
202 214Right-handed alpha
Helix 132
132
H
221 233Right-handed alpha
Helix 133
133
H
234 238Right-handed 310
Helix 134
134
H
250 254Right-handed 310
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There are 8 sheets in PDB entry 4J3F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 61first strand
Strand 2
A
34 39parallel
Strand 3
A
8 11parallel
Strand 4
A
86 89parallel
Strand 5
A
140 145parallel
Strand 6
A
183 189parallel
Strand 7
A
244 247parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 61first strand
Strand 2
B
34 39parallel
Strand 3
B
8 11parallel
Strand 4
B
86 89parallel
Strand 5
B
140 145parallel
Strand 6
B
183 189parallel
Strand 7
B
244 247parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 61first strand
Strand 2
C
34 39parallel
Strand 3
C
8 11parallel
Strand 4
C
86 89parallel
Strand 5
C
140 145parallel
Strand 6
C
183 189parallel
Strand 7
C
244 247parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 61first strand
Strand 2
D
34 39parallel
Strand 3
D
8 11parallel
Strand 4
D
86 89parallel
Strand 5
D
140 145parallel
Strand 6
D
183 189parallel
Strand 7
D
244 247parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
58 61first strand
Strand 2
E
34 39parallel
Strand 3
E
8 11parallel
Strand 4
E
86 89parallel
Strand 5
E
140 145parallel
Strand 6
E
183 189parallel
Strand 7
E
244 247parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
58 61first strand
Strand 2
F
34 39parallel
Strand 3
F
8 11parallel
Strand 4
F
86 89parallel
Strand 5
F
140 145parallel
Strand 6
F
183 189parallel
Strand 7
F
244 247parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
58 61first strand
Strand 2
G
34 39parallel
Strand 3
G
8 11parallel
Strand 4
G
86 89parallel
Strand 5
G
140 145parallel
Strand 6
G
183 189parallel
Strand 7
G
244 247parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 61first strand
Strand 2
H
34 39parallel
Strand 3
H
8 11parallel
Strand 4
H
86 89parallel
Strand 5
H
140 145parallel
Strand 6
H
183 189parallel
Strand 7
H
244 247parallel
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