Analysis of interatomic Contacts of Structural Units in PDB entry:
4J3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J3N entry

There are 6 chains in PDB entry 4J3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 455ASP 1201
B
 SER 449ASP 1201
C
 A 1 C 8
D
 T 9 T 20
E
 A 1 C 8
F
 T 9 T 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 4J3N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
467 470Right-handed 310
Helix 2
2
A
478 490Right-handed alpha
Helix 3
3
A
491 495Right-handed 310
Helix 4
4
A
513 520Right-handed alpha
Helix 5
5
A
520 531Right-handed alpha
Helix 6
6
A
543 547Right-handed 310
Helix 7
7
A
559 577Right-handed alpha
Helix 8
8
A
577 583Right-handed alpha
Helix 9
9
A
641 646Right-handed alpha
Helix 10
10
A
647 649Right-handed 310
Helix 11
11
A
658 670Right-handed alpha
Helix 12
12
A
673 692Right-handed alpha
Helix 13
13
A
711 718Right-handed alpha
Helix 14
14
A
718 731Right-handed alpha
Helix 15
15
A
739 753Right-handed alpha
Helix 16
16
A
760 772Right-handed alpha
Helix 17
17
A
776 789Right-handed alpha
Helix 18
18
A
818 821Right-handed 310
Helix 19
19
A
829 834Right-handed alpha
Helix 20
20
A
835 840Right-handed alpha
Helix 21
21
A
862 867Right-handed alpha
Helix 22
22
A
884 897Right-handed alpha
Helix 23
23
A
947 955Right-handed alpha
Helix 24
24
A
955 962Right-handed alpha
Helix 25
25
A
989 1000Right-handed alpha
Helix 26
26
A
1000 1005Right-handed alpha
Helix 27
27
A
1030 1076Right-handed alpha
Helix 28
28
A
1085 1096Right-handed alpha
Helix 29
29
A
1101 1110Right-handed alpha
Helix 30
30
A
1138 1143Right-handed alpha
Helix 31
31
A
1145 1149Right-handed 310
Helix 32
32
A
1150 1173Right-handed alpha
Helix 33
33
A
1175 1201Right-handed alpha
Helix 34
34
B
467 470Right-handed 310
Helix 35
35
B
478 490Right-handed alpha
Helix 36
36
B
491 495Right-handed 310
Helix 37
37
B
513 520Right-handed alpha
Helix 38
38
B
520 531Right-handed alpha
Helix 39
39
B
542 547Right-handed 310
Helix 40
40
B
559 577Right-handed alpha
Helix 41
41
B
577 582Right-handed alpha
Helix 42
42
B
638 646Right-handed alpha
Helix 43
43
B
647 649Right-handed 310
Helix 44
44
B
658 670Right-handed alpha
Helix 45
45
B
673 692Right-handed alpha
Helix 46
46
B
711 718Right-handed alpha
Helix 47
47
B
718 731Right-handed alpha
Helix 48
48
B
739 753Right-handed alpha
Helix 49
49
B
760 772Right-handed alpha
Helix 50
50
B
776 789Right-handed alpha
Helix 51
51
B
829 834Right-handed alpha
Helix 52
52
B
835 842Right-handed 310
Helix 53
53
B
862 867Right-handed alpha
Helix 54
54
B
884 897Right-handed alpha
Helix 55
55
B
947 955Right-handed alpha
Helix 56
56
B
955 961Right-handed alpha
Helix 57
57
B
989 999Right-handed alpha
Helix 58
58
B
1000 1005Right-handed alpha
Helix 59
59
B
1030 1076Right-handed alpha
Helix 60
60
B
1085 1096Right-handed alpha
Helix 61
61
B
1101 1110Right-handed alpha
Helix 62
62
B
1138 1143Right-handed alpha
Helix 63
63
B
1145 1149Right-handed 310
Helix 64
64
B
1150 1174Right-handed alpha
Helix 65
65
B
1175 1201Right-handed alpha
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There are 14 sheets in PDB entry 4J3N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 502first strand
Strand 2
A
472 477parallel
Strand 3
A
551 555parallel
Strand 4
A
586 589parallel
Strand 5
A
651 655anti-parallel
Strand 6
A
708 710parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
758 759first strand
Strand 2
A
823 824anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
844 847first strand
Strand 2
A
850 854anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 872first strand
Strand 2
A
877 879anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
914 919first strand
Strand 2
A
922 926anti-parallel
Strand 3
A
1008 1012anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
928 933first strand
Strand 2
A
936 941anti-parallel
Strand 3
A
984 987anti-parallel
Strand 4
A
972 975anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1016 1019first strand
Strand 2
A
1025 1028anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
497 502first strand
Strand 2
B
472 477parallel
Strand 3
B
551 555parallel
Strand 4
B
586 589parallel
Strand 5
B
651 655anti-parallel
Strand 6
B
708 710parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
758 759first strand
Strand 2
B
823 824anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
844 847first strand
Strand 2
B
850 854anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
870 872first strand
Strand 2
B
877 879anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
914 919first strand
Strand 2
B
922 926anti-parallel
Strand 3
B
1008 1012anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
928 933first strand
Strand 2
B
936 941anti-parallel
Strand 3
B
984 987anti-parallel
Strand 4
B
972 975anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1016 1019first strand
Strand 2
B
1025 1028anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il