Analysis of interatomic Contacts of Structural Units in PDB entry:
4J3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J3P entry

There is 1 chain in PDB entry 4J3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5LEU 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 4J3P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 34Right-handed alpha
Helix 2
2
A
59 61Right-handed 310
Helix 3
3
A
62 77Right-handed alpha
Helix 4
4
A
93 106Right-handed alpha
Helix 5
5
A
107 109Right-handed 310
Helix 6
6
A
114 134Right-handed alpha
Helix 7
7
A
144 149Right-handed 310
Helix 8
8
A
151 155Right-handed 310
Helix 9
9
A
242 250Right-handed alpha
Helix 10
10
A
251 261Right-handed alpha
Helix 11
11
A
264 274Right-handed alpha
Helix 12
12
A
281 290Right-handed alpha
Helix 13
13
A
301 306Right-handed 310
Helix 14
14
A
307 325Right-handed alpha
Helix 15
15
A
326 331Right-handed alpha
Helix 16
16
A
339 343Right-handed 310
Helix 17
17
A
368 370Right-handed 310
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There are 6 sheets in PDB entry 4J3P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
53 57parallel
Strand 3
A
380 383parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 171first strand
Strand 2
A
196 199anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
188 190anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
235 236anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
223 224anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 355first strand
Strand 2
A
365 366anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il