Analysis of interatomic Contacts of Structural Units in PDB entry:
4J4A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4J4A entry

There are 12 chains in PDB entry 4J4A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 25
B
 LEU 1LEU 25
C
 LEU 1LEU 25
D
 GLY -1LEU 25
E
 GLY -1ARG 22
F
 GLY -1ASP 21
G
 LEU 3LEU 25
H
 SER 0ASP 21
I
 LEU 1ARG 22
J
 GLY -1LEU 25
K
 GLY -1ALA 23
L
 GLY -1GLU 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4J4A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
-1 22Right-handed alpha
Helix 2
2
B
2 22Right-handed alpha
Helix 3
3
C
2 20Right-handed alpha
Helix 4
4
D
0 23Right-handed alpha
Helix 5
5
E
0 22Right-handed alpha
Helix 6
6
F
0 21Right-handed alpha
Helix 7
7
G
4 22Right-handed alpha
Helix 8
8
H
1 21Right-handed alpha
Helix 9
9
I
2 22Right-handed alpha
Helix 10
10
J
0 21Right-handed alpha
Helix 11
11
K
0 22Right-handed alpha
Helix 12
12
L
0 19Right-handed alpha
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There are no sheets in PDB entry 4J4A
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il